View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19657_low_3 (Length: 509)
Name: NF19657_low_3
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 7 - 494
Target Start/End: Complemental strand, 5661523 - 5661041
Alignment:
| Q |
7 |
tagattatacttatctcacataccaattctaaattatcgggacatctctccctaaatcaggagggttaacnnnnnnnn--tatgattgtttgttctacta |
104 |
Q |
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| T |
5661523 |
tagattatacttatctcacataccaattctaaattatcgggacatctttccctaaatcaggagggttaacacaaaaaaaatatgattgtttgttctgcta |
5661424 |
T |
|
| Q |
105 |
aaaattgatggcattttgtaacccagaggagttacttgnnnnnnnnnggttacatgataaattacttgttaacacaaggcaacaactgttttttaaatta |
204 |
Q |
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| T |
5661423 |
aaaattgatggcattttgtaacccagaggagttacttgtttttttt-ggttacatgatgaattacttgttaacacaaggcaacaactgttttttaaatta |
5661325 |
T |
|
| Q |
205 |
taaaagattaaagcaatcgcaaaaggttctaagaaacacaaaagtgagatctcttagcaataaaggttgccccacacactggataagagctagctacaca |
304 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5661324 |
taaaagattaaagcaatcgcaataggttctaggaaacacaaaagtgagatctcttagcaataaaggtagccccacacactggataagagctagctacaca |
5661225 |
T |
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| Q |
305 |
acaaatgactccactcaccagggaaaaggatgatgagtggaaaagtcatagattaagaataagaacattaggtgaattaacaaccaataatcatatagat |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
5661224 |
acaaatgactccactcaccagggaaaaggatgatgagtggaaaagtcatagattaagaat------attaggttaattaacaaccaataatcatatagat |
5661131 |
T |
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| Q |
405 |
aggtgcccgattgagccatgatgttattagaattgtaatttgcataatgaatcgcattaaccaaataaacaagacaaattagggaatatg |
494 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5661130 |
aggtgcccgattgagccatgatgttattagaattgtgatttgcaaaatgaatcgcattaaccaaataaacaagacaaattagggaatatg |
5661041 |
T |
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