View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19657_low_7 (Length: 425)
Name: NF19657_low_7
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19657_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 46460434 - 46460841
Alignment:
| Q |
1 |
gttgttcaattattgcaagtttttgatcatattttatgttgaggtgttgatgaattatgatgtttattgtttgatttggcttatgtaggcatatggtttt |
100 |
Q |
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| T |
46460434 |
gttgttcaattattgcaagtttttaatcatattttatgttgaggtgttgatgaattatgatgtttattgtttgatttggcttatgtaggcatatggtttt |
46460533 |
T |
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| Q |
101 |
agttcttctgatgtttttataaaaagggttgtagctaaagctggtgatgttgttgaagtaagctttgattgagtacttattggttgtgtaattaattgat |
200 |
Q |
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| T |
46460534 |
agttcttctgatgtttttataaaaagggttgtagctaaagctggtgatgttgttgaagtaagctttgattgagtacttattggttgtgtaattaattgat |
46460633 |
T |
|
| Q |
201 |
cacattcgaattgttgtatcttgatttctagtatcttatattgttgttttggattttgttgcaggttcgtgatgggaaacttctggtgaatggtgttgct |
300 |
Q |
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| T |
46460634 |
cacattcgaattgctgtatcttgatttctagtatcttatattgttgttttggattttgtcgcaggttcgtgatgggaaacttctggtgaatggtgttgct |
46460733 |
T |
|
| Q |
301 |
gaagatgaggaatttgttttagagcctcttgcttacgagttggctccaatggtaatgatatttctgtggtaatggtgctttgtttattgattgtgaatac |
400 |
Q |
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| T |
46460734 |
gaagatgaggaatttgttttagagcctcttgcttacgagttggctccaatggtaatgatatttctgtggtaatggtgctttgtttattgattgtgaatac |
46460833 |
T |
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| Q |
401 |
ttgggaac |
408 |
Q |
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| T |
46460834 |
ttgggaac |
46460841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 24452941 - 24453017
Alignment:
| Q |
277 |
aaacttctggtgaatggtgttgctgaagatgaggaatttgttttagagcctcttgcttacgagttggctccaatggt |
353 |
Q |
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| T |
24452941 |
aaactactagtgaatggtgttgctgaacaagaggaatttgttttagagcctcttgattacgagttggctccaatggt |
24453017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 24452865 - 24452924
Alignment:
| Q |
94 |
tggttttagttcttctgatgtttttataaaaagggttgtagctaaagctggtgatgttgt |
153 |
Q |
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| T |
24452865 |
tggttatagttcatctgatgtttttataaaaaggattgtggctaaggctggtgatgttgt |
24452924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 11686608 - 11686535
Alignment:
| Q |
4 |
gttcaattattgcaagtttttgatcatattttatgttgaggtgttgatgaattatgatgtttattgtttgatttggcttatg |
85 |
Q |
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|||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
11686608 |
gttcaattattgcaagtttttggtcatattttatgttta--------tgaattatgatgtttattgtttgatttggcttatg |
11686535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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