View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19657_low_8 (Length: 380)

Name: NF19657_low_8
Description: NF19657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19657_low_8
NF19657_low_8
[»] chr8 (7 HSPs)
chr8 (103-366)||(129914-130177)
chr8 (103-256)||(9866132-9866284)
chr8 (102-149)||(32057264-32057311)
chr8 (103-143)||(9875372-9875412)
chr8 (102-149)||(41708414-41708461)
chr8 (202-256)||(45482965-45483019)
chr8 (120-149)||(9875166-9875195)
[»] chr5 (6 HSPs)
chr5 (202-366)||(11240805-11240969)
chr5 (103-256)||(22292693-22292845)
chr5 (17-102)||(23662408-23662493)
chr5 (17-102)||(23796095-23796180)
chr5 (103-256)||(13578917-13579080)
chr5 (103-149)||(42910046-42910092)
[»] chr6 (9 HSPs)
chr6 (103-256)||(2196924-2197076)
chr6 (101-256)||(24016689-24016843)
chr6 (203-366)||(1569698-1569866)
chr6 (99-214)||(629804-629919)
chr6 (199-365)||(7656426-7656593)
chr6 (199-360)||(7672966-7673128)
chr6 (103-149)||(1569578-1569624)
chr6 (107-149)||(31098704-31098746)
chr6 (103-149)||(35176248-35176294)
[»] scaffold0031 (1 HSPs)
scaffold0031 (108-256)||(91193-91340)
[»] chr7 (14 HSPs)
chr7 (203-366)||(15746445-15746613)
chr7 (103-256)||(13926043-13926195)
chr7 (179-256)||(38656967-38657044)
chr7 (102-149)||(19794396-19794443)
chr7 (102-149)||(13931851-13931898)
chr7 (103-149)||(15746687-15746733)
chr7 (179-256)||(8943031-8943108)
chr7 (104-143)||(19795284-19795323)
chr7 (103-149)||(6730277-6730323)
chr7 (99-149)||(13926216-13926266)
chr7 (103-149)||(21460130-21460176)
chr7 (103-149)||(45720725-45720771)
chr7 (203-244)||(44212817-44212858)
chr7 (101-149)||(38319289-38319337)
[»] scaffold0268 (1 HSPs)
scaffold0268 (102-245)||(18949-19091)
[»] scaffold1603 (1 HSPs)
scaffold1603 (102-256)||(180-333)
[»] chr3 (12 HSPs)
chr3 (280-366)||(11759084-11759170)
chr3 (103-176)||(31893430-31893503)
chr3 (179-256)||(52616409-52616486)
chr3 (101-149)||(11758854-11758902)
chr3 (103-143)||(34134118-34134158)
chr3 (179-254)||(51846921-51846996)
chr3 (179-245)||(11758942-11759008)
chr3 (103-149)||(35441776-35441822)
chr3 (103-149)||(35442568-35442614)
chr3 (109-149)||(44308430-44308470)
chr3 (105-149)||(49085300-49085344)
chr3 (101-149)||(49789112-49789160)
[»] chr4 (6 HSPs)
chr4 (273-366)||(36230509-36230602)
chr4 (187-256)||(13736608-13736677)
chr4 (102-143)||(28804180-28804221)
chr4 (103-176)||(43259800-43259873)
chr4 (203-256)||(47336086-47336140)
chr4 (179-256)||(26889273-26889350)
[»] chr1 (12 HSPs)
chr1 (202-288)||(48735013-48735099)
chr1 (179-245)||(27052623-27052689)
chr1 (103-149)||(38634964-38635010)
chr1 (102-149)||(28032874-28032921)
chr1 (107-149)||(8674693-8674735)
chr1 (103-149)||(10459767-10459813)
chr1 (103-149)||(37179120-37179166)
chr1 (103-149)||(48734910-48734956)
chr1 (103-149)||(50138338-50138384)
chr1 (103-149)||(51311643-51311689)
chr1 (103-149)||(51719437-51719483)
chr1 (103-139)||(38634083-38634119)
[»] chr2 (7 HSPs)
chr2 (203-289)||(18457739-18457825)
chr2 (179-256)||(29075904-29075981)
chr2 (179-256)||(15573328-15573405)
chr2 (103-149)||(12521365-12521411)
chr2 (103-149)||(12524142-12524188)
chr2 (103-149)||(29076031-29076077)
chr2 (103-149)||(33473865-33473911)
[»] scaffold0604 (2 HSPs)
scaffold0604 (202-256)||(7346-7400)
scaffold0604 (104-149)||(7217-7262)
[»] scaffold0047 (1 HSPs)
scaffold0047 (103-149)||(50417-50463)
[»] scaffold0027 (1 HSPs)
scaffold0027 (103-149)||(18022-18068)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 103 - 366
Target Start/End: Complemental strand, 130177 - 129914
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaat----------ttacctgctggaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  |          ||||||||||| |    
T  130177 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggatagctggcagttttggggatgaggttacctgctggga 130078  T
Q  193 tattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacacccccgaaatctgaaaatgcagagtagcaattcacacttac 292  Q
              |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  130077 ----------aaacatattataattgaaaatattgattttattgtttttgctggtgacacccccaaaatctgaaaatgcagagtagcaattcacacttac 129988  T
Q  293 taaccatcaacccccattttgaatctcacgtgagtcttctttctctcttccttcacttgaatctcacaaagaat 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  129987 taaccatcaacccccattttgaatctcacgtgagtcttctttctctcttccttcacttgaatctcacaaagaat 129914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 9866132 - 9866284
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctggaatattttaatg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| | ||||||| |||||||||||||    
T  9866132 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaatttttccatggaaggacagctgtaggtaaatgacctgctagaatattttaatg 9866231  T
Q  203 aaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
       ||||||||| |  |||||||| | |||||||||| ||||| | ||||||||    
T  9866232 tttcatattatattgtaaaatattca-tttattgtttctgctgctcacaccccc 9866284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 32057264 - 32057311
Alignment:
Q  102 gggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||    
T  32057264 gggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 32057311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 9875412 - 9875372
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccat 143  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  9875412 ggtggcatttagcatgcacaaatgttaaatttgtgcaccat 9875372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 41708414 - 41708461
Alignment:
Q  102 gggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||| ||||||||||  || |||||||||||||||||||    
T  41708414 gggtggcatttagaatgcacaaatattaaatttgtgcaccatgcacaa 41708461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 45483019 - 45482965
Alignment:
Q  202 gaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||||||  ||||||||| ||||||||||||| ||||  ||||||||    
T  45483019 gaaacatattataatgaaaaatattggttttattgttttttctggatacaccccc 45482965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 9875195 - 9875166
Alignment:
Q  120 acaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||||||||||||||||||||    
T  9875195 acaaatgatagatttgtgcaccatgcacaa 9875166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 202 - 366
Target Start/End: Complemental strand, 11240969 - 11240805
Alignment:
Q  202 gaaacatattataattgaaaatattgattttattgtttttgctggtgacacccccgaaatctgaaaatgcagagtagcaattcacacttactaaccatca 301  Q
    ||||||||||||||| |||||||||| |||||||||||||||||  |||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  11240969 gaaacatattataatggaaaatattggttttattgtttttgctgaagacacccccgaaatttggaaatgcagagtagcaattcacacttactaaccatca 11240870  T
Q  302 acccccattttgaatctcacgtgagtcttctttctctcttccttcacttgaatctcacaaagaat 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11240869 acccccattttgaatctcacgtgagtcttctttctctcttccttcacttgaatctcacaaagaat 11240805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 22292845 - 22292693
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctggaatattttaatg 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  22292845 ggtggcatttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtttcatacctgctggaatattttaatg 22292746  T
Q  203 aaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||| |  |||||||| | |||||||||| ||||| | ||||||||    
T  22292745 aaacatattatattgtaaaatattca-tttattgtttctgctgctcacaccccc 22292693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 23662493 - 23662408
Alignment:
Q  17 tttgtatccatgtcaacgtctcttatgtgactagtgtgttggagaaccaaaatatgatgaaaacaaagttacactagtagcatttg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23662493 tttgtatccatgtcaacgtctcttatgtgactagtgtgttggagaaccaaaatatgatgaaaacaaagttacactagtagcatttg 23662408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 23796095 - 23796180
Alignment:
Q  17 tttgtatccatgtcaacgtctcttatgtgactagtgtgttggagaaccaaaatatgatgaaaacaaagttacactagtagcatttg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23796095 tttgtatccatgtcaacgtctcttatgtgactagtgtgttggagaaccaaaatatgatgaaaacaaagttacactagtagcatttg 23796180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 13579080 - 13578917
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaa----------tttacctgctggaa 192  Q
    |||||||||||| |||||||||||  ||||||||||| ||||||||| ||   ||||||||||||| |||||||||          ||||||||||||||    
T  13579080 ggtggcatttagtatgcacaaatgcaagatttgtgcatcatgcacaacttgtgcatggaaggacagttggcggtaaaaattcaaattttacctgctggaa 13578981  T
Q  193 tattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||| |||| ||| ||||||||||  ||||||||   |||||| ||| ||||| | ||||||||    
T  13578980 tattctaatcaaaaatattataatgtaaaatattccatttattatttctgctgttcacaccccc 13578917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 42910092 - 42910046
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||||||||||||  ||| ||||||||||||| |||||    
T  42910092 ggtggcatttagcatgcacaaaacataaatttgtgcaccatacacaa 42910046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 2197076 - 2196924
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctggaatattttaatg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||    
T  2197076 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaatttttgtatggaaggacagctggcggtaatttacctactggaatattttaatg 2196977  T
Q  203 aaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||| |  |||||||| | |||||||||| ||||| | ||||||||    
T  2196976 aaacatattatattgtaaaatattca-tttattgtttctgctgctcacaccccc 2196924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 24016689 - 24016843
Alignment:
Q  101 tgggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctggaatattttaa 200  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  24016689 tgggttgcatttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgacggtaatttacctgctggattattttaa 24016788  T
Q  201 tgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||||| |  |||||||| | |||||||||| || || | ||||||||    
T  24016789 tgaaacatattatattgtaaaatattca-tttattgtttctgttgctcacaccccc 24016843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 203 - 366
Target Start/End: Original strand, 1569698 - 1569866
Alignment:
Q  203 aaacatattataattgaaaatattgattttattgtttttgctggtgacacccccgaaatctgaaaatgcagagtagcaattcacacttactaaccatcaa 302  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  |||||||| ||  |||||||||||||  ||||||||| ||||| ||||||||||    
T  1569698 aaacatattataatagaaaatattggttttattgtttttgctggaaacacccccaaa--ctgaaaatgcagaacagcaattcaaacttattaaccatcaa 1569795  T
Q  303 cccccattttgaatctcacgtgagtc-------ttctttctctcttccttcacttgaatctcacaaagaat 366  Q
    || |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  1569796 cctccattttgaatctcacgtgagtcttcttagttctttctctcttccttcacttgaatctcacaaagaat 1569866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 629804 - 629919
Alignment:
Q  99 tttgggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctggaatatttt 198  Q
    |||||||| ||||||| ||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  629804 tttgggtgccatttagaatgcacaaatacaagatttgtgcaccatgcacaatttttccatggaaggacagctggcggtaatttacctgctggaatatttt 629903  T
Q  199 aatgaaacatattata 214  Q
    ||| ||| ||||||||    
T  629904 aatcaaaaatattata 629919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 365
Target Start/End: Original strand, 7656426 - 7656593
Alignment:
Q  199 aatgaaacatattataattgaaaatattgattttattgtttttgctggtgacacccccgaaatctgaaaatgcagagtagcaattcacacttactaacca 298  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||    |||||||  ||||||||||||||| |||||||||||||||| || |  |     
T  7656426 aatgaaacatattttaatagaaaatattggttttattgtttttgcttaatacacccctcaaatctgaaaatgcaaagtagcaattcacactaacaacacg 7656525  T
Q  299 tcaacccccattttgaatctcacgtgagtcttc-tttctctcttccttcacttgaatctcacaaagaa 365  Q
    ||| ||| |||  |||||||||| | | ||| | |||| |||||||||||||||||||||||| ||||    
T  7656526 tcacccctcatcatgaatctcacttcattctccttttccctcttccttcacttgaatctcacatagaa 7656593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 199 - 360
Target Start/End: Complemental strand, 7673128 - 7672966
Alignment:
Q  199 aatgaaacatattataattgaaaatattgattttattgtttttgctggtgacacccccgaaatctgaaaatgcagagtagcaattcacacttactaacca 298  Q
    ||||||||||||| |||| |||||||||| |||||||||||||||||   ||| |||| |||||||||||||||||| ||||||||||||| || |        
T  7673128 aatgaaacatattttaatagaaaatattggttttattgtttttgctgaatacatcccccaaatctgaaaatgcagagaagcaattcacactaacaacatg 7673029  T
Q  299 tcaacccccattttgaatctcacgtgagtcttc-tttctctcttccttcacttgaatctcaca 360  Q
    ||| ||| |||  |||||||||| | ||| | | |||| ||||||||||||||||||||||||    
T  7673028 tcacccctcatcatgaatctcacttcagtttccttttccctcttccttcacttgaatctcaca 7672966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 1569578 - 1569624
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||||||||||||  || |||||||||||||||||||||    
T  1569578 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 1569624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 31098704 - 31098746
Alignment:
Q  107 gcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  31098704 gcatttagcatgcacaaattataaatttgtgcaccatgcacaa 31098746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 35176248 - 35176294
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||||||||||||   ||| |||||||||||||||||||    
T  35176248 ggtggcatttagcatgcacaagatataaatttgtgcaccatgcacaa 35176294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 108 - 256
Target Start/End: Complemental strand, 91340 - 91193
Alignment:
Q  108 catttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctggaatattttaatgaaaca 207  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  91340 catttagtatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctgtcggtaatttacctgctggattattttaatgaaaca 91241  T
Q  208 tattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    ||||||| |  |||||||| | |||||||||| ||||| | ||||||||    
T  91240 tattatattgtaaaatattca-tttattgtttctgctgctcacaccccc 91193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 9e-46; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 203 - 366
Target Start/End: Complemental strand, 15746613 - 15746445
Alignment:
Q  203 aaacatattataattgaaaatattgattttattgtttttgctggtgacacccccgaaatctgaaaatgcagagtagcaattcacacttactaaccatcaa 302  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  |||||||| ||  |||||||||||||  ||||||||| ||||| ||||||||||    
T  15746613 aaacatattataatagaaaatattggttttattgtttttgctggaaacacccccaaa--ctgaaaatgcagaacagcaattcaaacttattaaccatcaa 15746516  T
Q  303 cccccattttgaatctcacgtgagtct-------tctttctctcttccttcacttgaatctcacaaagaat 366  Q
    || ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  15746515 cctccattttgaatctcacgtgagtcttcttagttctttctctcttccttcacttgaatctcacaaagaat 15746445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 13926195 - 13926043
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctggaatattttaatg 202  Q
    |||||||||||| ||||||||||   ||||||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||||     
T  13926195 ggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaacttttgtatggaaggacagctggcggtaatttacctgctggaatattttaata 13926096  T
Q  203 aaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||| |  |||||||| | |||||||||| ||||| | ||||||||    
T  13926095 aaacatattatattataaaatattca-tttattgtttctgctgctcacaccccc 13926043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 38656967 - 38657044
Alignment:
Q  179 tttacctgctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||   |||||||||| ||||| | ||||||||    
T  38656967 tttacctgctggaatattttaatgaaacatattatattgtaaaatattttatttattgtttctgctgctcacaccccc 38657044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 19794396 - 19794443
Alignment:
Q  102 gggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  19794396 gggtggcatttagcatgcacaattgataaatttgtgcaccatgcacaa 19794443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 13931898 - 13931851
Alignment:
Q  102 gggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||||||||||||  || |||||||||||||||||||||    
T  13931898 gggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 13931851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 15746733 - 15746687
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||||||||||||  || |||||||||||||||||||||    
T  15746733 ggtggcatttagcatgcacaagggaaagatttgtgcaccatgcacaa 15746687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 8943031 - 8943108
Alignment:
Q  179 tttacctgctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    ||||||||||||||||||||||| ||| |||||||| |  ||||||||   |||||||||| ||||| | ||||||||    
T  8943031 tttacctgctggaatattttaatcaaaaatattatattgtaaaatattccatttattgtttctgctgctcacaccccc 8943108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 19795323 - 19795284
Alignment:
Q  104 gtggcatttagcatgcacaaatgatagatttgtgcaccat 143  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  19795323 gtggcatttagcatgcacaattgataaatttgtgcaccat 19795284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 6730323 - 6730277
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||||||||||| | | | |||||||||||||||||||    
T  6730323 ggtggcatttagcatgcacaactaacaaatttgtgcaccatgcacaa 6730277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 13926216 - 13926266
Alignment:
Q  99 tttgggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||| |||||||||||||||||||  || |||||||| ||||||||||||    
T  13926216 tttggatggcatttagcatgcacaagagaaagatttgtacaccatgcacaa 13926266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 21460130 - 21460176
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||| ||||||||||| || ||||||| |||||||||||    
T  21460130 ggtggcatttaggatgcacaaatgttaaatttgtgtaccatgcacaa 21460176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 45720725 - 45720771
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||  |||| |||||||| |||||||||||||||||||    
T  45720725 ggtggcatttagggtgcataaatgataaatttgtgcaccatgcacaa 45720771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 44212817 - 44212858
Alignment:
Q  203 aaacatattataattgaaaatattgattttattgtttttgct 244  Q
    ||||||||||||||  ||||||||| ||||||||||||||||    
T  44212817 aaacatattataatgaaaaatattggttttattgtttttgct 44212858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 38319337 - 38319289
Alignment:
Q  101 tgggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||||||||||||||   ||| |||||||| ||||||||||    
T  38319337 tgggtggcatttagcatgcacaagacataaatttgtgctccatgcacaa 38319289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 102 - 245
Target Start/End: Complemental strand, 19091 - 18949
Alignment:
Q  102 gggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctggaatattttaat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  19091 gggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggaggtaaattacctgctagaatattttaat 18992  T
Q  202 gaaacatattataattgaaaatattgattttattgtttttgctg 245  Q
    |   ||||||||| |  |||||||| | |||||||||| |||||    
T  18991 gtttcatattatattgtaaaatattca-tttattgtttctgctg 18949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 333 - 180
Alignment:
Q  102 gggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggtaatttacctgctggaatattttaat 201  Q
    ||||| ||||||| ||||||||||   | |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  333 gggtgccatttagaatgcacaaatataaaatttgtgcaccatgcacaattttcccatggaatgacagctggtggtaatttaccttctggaatattttaat 234  T
Q  202 gaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    ||||||||||||| |  |||||||| | |||||||||| ||||| | ||||||||    
T  233 gaaacatattatattgtaaaatattca-tttattgtttctgctgctcacaccccc 180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 11759084 - 11759170
Alignment:
Q  280 aattcacacttactaaccatcaacccccattttgaatctcacgtgagtcttctttctctcttccttcacttgaatctcacaaagaat 366  Q
    |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11759084 aattcaaacttaataaccatcgacccccattttgaatctcacgtgagtcttctttctctcttccttcacttgaatctcacaaagaat 11759170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 31893503 - 31893430
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggt 176  Q
    |||||||||||| ||||||||||   ||||||||||||||||||||||||   ||| ||||||||| |||||||    
T  31893503 ggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaatttgtgcattgaaggacaggtggcggt 31893430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 52616486 - 52616409
Alignment:
Q  179 tttacctgctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    ||||||||||||||||||||||||||| |||||||| |  | ||||||   |||||||||| ||||| | ||||||||    
T  52616486 tttacctgctggaatattttaatgaaaaatattatattgtataatattccatttattgtttctgctgctcacaccccc 52616409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 11758854 - 11758902
Alignment:
Q  101 tgggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||||||||||||||   | |||||||||||||||||||||    
T  11758854 tgggtggcatttagcatgcacaaggaaaagatttgtgcaccatgcacaa 11758902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 34134158 - 34134118
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccat 143  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  34134158 ggtggcatttagcatgcacaaatgttaaatttgtgcaccat 34134118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 51846921 - 51846996
Alignment:
Q  179 tttacctgctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccc 254  Q
    ||||||||||||||||||||||| ||| |||||||| |  ||||||||   |||||||||| ||||| | ||||||    
T  51846921 tttacctgctggaatattttaatcaaaaatattatattgaaaaatatttcatttattgtttctgctgctcacaccc 51846996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 11758942 - 11759008
Alignment:
Q  179 tttacctgctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctg 245  Q
    |||||||||||||| ||||||||||||||||| ||| |  ||||||||   |||||||||| |||||    
T  11758942 tttacctgctggaacattttaatgaaacatataatattgtaaaatattccatttattgtttctgctg 11759008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 35441776 - 35441822
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||  |||| |||||||| |||||||||||||||||||    
T  35441776 ggtggcatttagggtgcataaatgataaatttgtgcaccatgcacaa 35441822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 35442614 - 35442568
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||| |||||||||| ||| ||||||||||||| |||||    
T  35442614 ggtggcatttaggatgcacaaataataaatttgtgcaccatacacaa 35442568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 44308430 - 44308470
Alignment:
Q  109 atttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||| ||||||||||| |||||||||||||||| |||||    
T  44308430 atttaggatgcacaaatgttagatttgtgcaccatacacaa 44308470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 49085300 - 49085344
Alignment:
Q  105 tggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||| |||||||| || || |||||||||||||||||||    
T  49085300 tggcatttaggatgcacaagtgttaaatttgtgcaccatgcacaa 49085344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 49789112 - 49789160
Alignment:
Q  101 tgggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||||| ||||||||  ||| ||||||||||||| |||||    
T  49789112 tgggtggcatttagcctgcacaaagtataaatttgtgcaccatacacaa 49789160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 36230602 - 36230509
Alignment:
Q  273 gagtagcaattcacacttactaaccatcaacccccattttgaatctcacgtgagtcttctttctctcttccttcacttgaatctcacaaagaat 366  Q
    |||||| |||||| |||||| |  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36230602 gagtagtaattcaaacttaccagtcatcaacccccattctgaatctcacgtgagtcttctttctctcttccttcacttgaatctcacaaagaat 36230509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 13736608 - 13736677
Alignment:
Q  187 ctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||||||||||||||||||| |  ||||||||   |||||||||| ||||| | ||||||||    
T  13736608 ctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgctgctcacaccccc 13736677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 28804221 - 28804180
Alignment:
Q  102 gggtggcatttagcatgcacaaatgatagatttgtgcaccat 143  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  28804221 gggtggcatttaacatgcacaaatgataaatttgtgcaccat 28804180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 43259800 - 43259873
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaattttcccatggaaggacagctggcggt 176  Q
    |||||||||||| ||||||||||   | ||||||||||||||||||||||   ||| ||||||||| |||||||    
T  43259800 ggtggcatttagaatgcacaaatacaaaatttgtgcaccatgcacaatttatgcattgaaggacaggtggcggt 43259873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 47336086 - 47336140
Alignment:
Q  203 aaacatattataattgaaaata-ttgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||||| ||||||| ||| |||||||||||||| |||| ||||||||    
T  47336086 aaacatattataatggaaaatatttggttttattgtttttggtggttacaccccc 47336140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 26889350 - 26889273
Alignment:
Q  179 tttacctgctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    ||||||||||||||||||||||| ||| |||||||| |  ||||||||   |||||||||| ||| | | ||||||||    
T  26889350 tttacctgctggaatattttaatcaaaaatattatattgtaaaatattccatttattgtttctgccgctcacaccccc 26889273  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 48735013 - 48735099
Alignment:
Q  202 gaaacatattataattgaaaatattgattttattgtttttgctggtgacacccccgaaatctgaaaatgcagagtagcaattcacac 288  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  48735013 gaaacatattataatggaaaatattggttttattgtttttgctggtgacaccctccaaaactgaaaatgcagagtagcaattcacac 48735099  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 27052689 - 27052623
Alignment:
Q  179 tttacctgctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctg 245  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||   |||||||||| |||||    
T  27052689 tttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgctg 27052623  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 38635010 - 38634964
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  38635010 ggtggcatttagcatgcacaattgataaatttgtgcatcatgcacaa 38634964  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 28032874 - 28032921
Alignment:
Q  102 gggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||| ||||||||||   |||||||||||||||||||||    
T  28032874 gggtggcatttagaatgcacaaatataagatttgtgcaccatgcacaa 28032921  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 8674735 - 8674693
Alignment:
Q  107 gcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||| ||||||||||| |||||||||||||||| |||||    
T  8674735 gcatttaggatgcacaaatgttagatttgtgcaccatacacaa 8674693  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 10459767 - 10459813
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||| ||||||||||| || ||||||||||||| |||||    
T  10459767 ggtggcatttaggatgcacaaatgttaaatttgtgcaccatacacaa 10459813  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 37179120 - 37179166
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||| ||||| |||||||| ||||||| |||||||||||    
T  37179120 ggtggcatttagaatgcataaatgataaatttgtgtaccatgcacaa 37179166  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 48734910 - 48734956
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||| ||||||||||   |||||||||||||||||||||    
T  48734910 ggtggcatttagaatgcacaaatataagatttgtgcaccatgcacaa 48734956  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 50138384 - 50138338
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||| ||||||||||| ||| ||||||||| |||||||||    
T  50138384 ggtggcatttaacatgcacaaattataaatttgtgcatcatgcacaa 50138338  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 51311689 - 51311643
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||||||||||||||  ||| ||||||||||||| |||||    
T  51311689 ggtggcatttagcatgcacaaagtataaatttgtgcaccatacacaa 51311643  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 51719437 - 51719483
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||| |||||||||| ||| ||||||||| |||||||||    
T  51719437 ggtggcatttagtatgcacaaattataaatttgtgcatcatgcacaa 51719483  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 38634083 - 38634119
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgca 139  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  38634083 ggtggcatttagcatgcacaattgataaatttgtgca 38634119  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 18457825 - 18457739
Alignment:
Q  203 aaacatattataattgaaaatattgattttattgtttttgctggtgacacccccgaaatctgaaaatgcagagtagcaattcacact 289  Q
    ||||||||||||||   |||||||| |||||||||||||||||   |||||||  ||||| |||||||||||| |||||||||||||    
T  18457825 aaacatattataatgagaaatattggttttattgtttttgctgtatacacccctcaaatccgaaaatgcagagaagcaattcacact 18457739  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 29075981 - 29075904
Alignment:
Q  179 tttacctgctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||   |||||||||| ||||| | ||||||||    
T  29075981 tttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctgctgctcacaccccc 29075904  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 15573405 - 15573328
Alignment:
Q  179 tttacctgctggaatattttaatgaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||||   |||||||||| | ||| | ||||||||    
T  15573405 tttacctgctggaatattttaatgaaacatattatattgtaaaatattccatttattgtttctactgctcacaccccc 15573328  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 12521365 - 12521411
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||||||||||||  || ||||||||||| |||||||||    
T  12521365 ggtggcatttagcatgcacaagggaaagatttgtgcatcatgcacaa 12521411  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 12524188 - 12524142
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||    
T  12524188 ggtggtatttagcatgcacaagagaaagatttgtgcaccatgcacaa 12524142  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 29076077 - 29076031
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||| ||||||||||   |||||||||||||||||||||    
T  29076077 ggtggcatttagaatgcacaaatacaagatttgtgcaccatgcacaa 29076031  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 33473865 - 33473911
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||| |||||||| || || |||||||||||||||||||    
T  33473865 ggtggcatttagtatgcacaagtgttaaatttgtgcaccatgcacaa 33473911  T

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Target: scaffold0604 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 7346 - 7400
Alignment:
Q  202 gaaacatattataattgaaaatattgattttattgtttttgctggtgacaccccc 256  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||    
T  7346 gaaacatattataatggaaaatattggttttattgtttttgctggatacaccccc 7400  T

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Target: scaffold0604; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 7217 - 7262
Alignment:
Q  104 gtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||    
T  7217 gtggcatttagtatgcacaaatgtaagatttgtgcaccatgcacaa 7262  T

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Target: scaffold0047 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 50417 - 50463
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    ||||||||||| ||||||||||| ||| ||||||||| |||||||||    
T  50417 ggtggcatttaacatgcacaaattataaatttgtgcatcatgcacaa 50463  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 18022 - 18068
Alignment:
Q  103 ggtggcatttagcatgcacaaatgatagatttgtgcaccatgcacaa 149  Q
    |||||||||||| |||||||||| ||| ||||||||| |||||||||    
T  18022 ggtggcatttagtatgcacaaattataaatttgtgcatcatgcacaa 18068  T

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