View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_high_10 (Length: 609)
Name: NF19658_high_10
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 591
Target Start/End: Complemental strand, 18498872 - 18498293
Alignment:
| Q |
13 |
tattttatagaatctccaaaagtacttgcatcttattaaccttgctatctttctttttcggtttctcagctttcacaattaaacgggtaggttcactaac |
112 |
Q |
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| T |
18498872 |
tattttctagaatctccaaaagtacttgcatcttattaatcttgctatctttctttttcggtttctcagctttcacaattaaacgggtaggttcactaac |
18498773 |
T |
|
| Q |
113 |
ctgctgctttggcttaccactgaccttttccatcggttacttcctgaccaagctttccatctacaaccatcttgcacacttctcttcttaagctcctaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18498772 |
ctgctgctttggcttaccactgaccttttccatcggttacttcctgaccaagctttccatctacaaccatcttgcacacttctcttcttaagctcccaat |
18498673 |
T |
|
| Q |
213 |
gttagcgagttgagtggaaatctacccaatctaaatctctagattttagattgaagcctcggtgttcctttcagtttcctcttaattctttgtgattgct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18498672 |
gttagcgagttgagtggaaatctacccaatctaaatctctagattttagaatgaagcctcggtgttcctttgtatttcctcttaattctttgtgattgct |
18498573 |
T |
|
| Q |
313 |
tcaatctgactttgagtagtctttatgtattgagtgagagtttcttcaagatttttccttcgttgttgttgatcagtaggttgaggtgtttgtaattgaa |
412 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18498572 |
tcaatttgactttgagtagtctttatgtattgagtgagagtttcttcaagatttttccttcgttgttgttgatcagtaggttgaggtgtttataattgaa |
18498473 |
T |
|
| Q |
413 |
atttgacggcttggccaactggaattgaagttgttagagtaaggaatcatttgctgtctagcaaaagctcccatgtaattctc--tctctttggataact |
510 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18498472 |
atttgacggcttggccaactagaattgaaattgttagagtaaggaatcatttgctgtctagcaaaagctcccatgtaattctctttctctttggataact |
18498373 |
T |
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| Q |
511 |
tcaaactagctggaactcatgcaccactttcttgagccttcacacaaaagtcgcaacctataacatttgttgacaactggc |
591 |
Q |
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| ||||||||||||| ||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||| |||| |
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| T |
18498372 |
t-aaactagctggaagtcatgcaccactttcacgagccttcacacaaaagttgtaaccgataacatttgttgacaattggc |
18498293 |
T |
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