View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_high_101 (Length: 240)
Name: NF19658_high_101
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_101 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 33768459 - 33768224
Alignment:
| Q |
5 |
gggtcgacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatgttaaatgtaaacactaagtaattatttctgt |
104 |
Q |
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| T |
33768459 |
gggtccacgttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatgttgaatgtaaacactaagtaattatttatgt |
33768360 |
T |
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| Q |
105 |
actgtcttgtgacttttaatttaatagagattacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgtttaccaccgagtttta |
204 |
Q |
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| T |
33768359 |
actgtcttgtgacttttaatttaatagagattacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgtttaccaccgagtttta |
33768260 |
T |
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| Q |
205 |
tccaagcatataggccctagagtttccatagctagc |
240 |
Q |
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| T |
33768259 |
tccaagcatataggccctagagtttccatagctagc |
33768224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 33761739 - 33761639
Alignment:
| Q |
136 |
tacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgtttaccaccgagttttatccaagcatataggccctagagtttccatag |
235 |
Q |
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| T |
33761739 |
tacatttatcattctcctttgcagcttataacaaatgacatgttcacaagtgtttatcaccgggttttatccaaaaatattggccctagaatttccatag |
33761640 |
T |
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| Q |
236 |
c |
236 |
Q |
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| T |
33761639 |
c |
33761639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 33771141 - 33771044
Alignment:
| Q |
133 |
gattacatttatcaattttctttgcagcttgtaacaaatgacatgttcacaagtgtttaccaccgagttttatccaagcatataggccctagagtttc |
230 |
Q |
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| T |
33771141 |
gattacatatatcaatcttgtttgcagcttgtaacaaatgacatgttcacaagtgtttatcatcgggttctatccaagaatataggacctagaatttc |
33771044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 33761857 - 33761782
Alignment:
| Q |
13 |
gttcctcctcttcatggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatgttaaatgtaaacact |
88 |
Q |
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| T |
33761857 |
gttcctccactgcatggatctcttgttgtaaacgttggtgatcttatgcaggtaagtgatggtaaatgtaaacact |
33761782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 33771278 - 33771222
Alignment:
| Q |
25 |
catggatctcttgtagtaaacatcggcgatcttctgcaggtaagtgatgttaaatgt |
81 |
Q |
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|||||||||||| ||||||| || || |||||||||||||||| | || |||||||| |
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| T |
33771278 |
catggatctcttatagtaaatattggtgatcttctgcaggtaactaattttaaatgt |
33771222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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