View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_high_103 (Length: 233)

Name: NF19658_high_103
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_high_103
NF19658_high_103
[»] chr4 (4 HSPs)
chr4 (27-217)||(14242987-14243176)
chr4 (20-200)||(14243174-14243353)
chr4 (172-215)||(14243203-14243246)
chr4 (136-185)||(14242975-14243024)
[»] chr2 (6 HSPs)
chr2 (27-217)||(6353537-6353726)
chr2 (20-200)||(6353724-6353903)
chr2 (56-215)||(7562807-7562970)
chr2 (172-215)||(6353753-6353796)
chr2 (136-206)||(7562771-7562842)
chr2 (136-185)||(6353525-6353574)
[»] chr5 (5 HSPs)
chr5 (56-203)||(3011193-3011339)
chr5 (56-215)||(8767582-8767745)
chr5 (161-215)||(3011097-3011151)
chr5 (136-206)||(8767710-8767781)
chr5 (173-208)||(3011232-3011267)
[»] chr8 (2 HSPs)
chr8 (20-127)||(24226864-24226967)
chr8 (160-215)||(24226748-24226803)
[»] chr3 (2 HSPs)
chr3 (20-119)||(425131-425226)
chr3 (142-186)||(425055-425099)
[»] chr1 (5 HSPs)
chr1 (20-128)||(17217504-17217601)
chr1 (136-186)||(17217381-17217431)
chr1 (159-215)||(17215654-17215710)
chr1 (169-215)||(17217396-17217442)
chr1 (136-186)||(17215675-17215725)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 14243176 - 14242987
Alignment:
Q  27 aaacaattcaaacaaaaagtgaatccaaaattaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaattatccat 126  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14243176 aaacaattcaaacaaaaagttaatccaaaattaggattatccaaacatagtctagattctctatccaccaacctatccaaaagaaatcacaattatccat 14243077  T
Q  127 gtagaaacaaaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtaggt 217  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14243076 gtagaaac-aaaacatgcagaaattgtaaatttgtctcgaagtagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtaggt 14242987  T

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Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 14243353 - 14243174
Alignment:
Q  20 atagggcaaacaattcaaacaaaaagtgaatccaaaattaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaat 119  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14243353 atagtgcaaacaattcaaacaaaaagtgaatccagaattaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaat 14243254  T
Q  120 tatccatgtagaaacaaaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaacaaaacatgcagaaattgtaaa 200  Q
    ||||||  ||||||| |||||||||||  | |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14243253 tatccacatagaaac-aaaacatgcaggcattgtaaaattgtctcgaagtagatagaaacaaaacatgcagaaattgtaaa 14243174  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 14243246 - 14243203
Alignment:
Q  172 atagaaacaaaacatgcagaaattgtaaaattgtctcgaagtag 215  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  14243246 atagaaacaaaacatgcaggcattgtaaaattgtctcgaagtag 14243203  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 14243024 - 14242975
Alignment:
Q  136 aaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaacaaaaca 185  Q
    |||||||||||||| |||||| |||||||||||||| ||| |||||||||    
T  14243024 aaaacatgcagaaattgtaaaattgtctcgaagtaggtagtaacaaaaca 14242975  T

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Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 6353726 - 6353537
Alignment:
Q  27 aaacaattcaaacaaaaagtgaatccaaaattaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaattatccat 126  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6353726 aaacaattcaaacaaaaagttaatccaaaattaggattatccaaacatagtctagattctctatccaccaacctatccaaaagaaatcacaattatccat 6353627  T
Q  127 gtagaaacaaaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtaggt 217  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6353626 gtagaaac-aaaacatgcagaaattgtaaatttgtctcgaagtagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtaggt 6353537  T

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Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 6353903 - 6353724
Alignment:
Q  20 atagggcaaacaattcaaacaaaaagtgaatccaaaattaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaat 119  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6353903 atagtgcaaacaattcaaacaaaaagtgaatccataattaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaat 6353804  T
Q  120 tatccatgtagaaacaaaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaacaaaacatgcagaaattgtaaa 200  Q
    ||||||  ||||||| |||||||||||  | |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6353803 tatccacatagaaac-aaaacatgcaggcattgtaaaattgtctcgaagtagatagaaacaaaacatgcagaaattgtaaa 6353724  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 215
Target Start/End: Complemental strand, 7562970 - 7562807
Alignment:
Q  56 attaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaattatccatgtagaaacaaaaacatgcagaaaa-tgta 154  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||| |||||||| ||||||||| ||||| ||||    
T  7562970 attaggattatccaaacatagtctagattctctatccatcaagttatccaaaagaaatcacgattatccacgtagaaac-aaaacatgcggaaaattgta 7562872  T
Q  155 a----atttgtctcgaagtagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtag 215  Q
    |    | |||||| ||| |||   | ||||||||||||||||||| |||||||||||| ||||||    
T  7562871 aaattaattgtcttgaattaggcggtaacaaaacatgcagaaattttaaaattgtctcaaagtag 7562807  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 6353796 - 6353753
Alignment:
Q  172 atagaaacaaaacatgcagaaattgtaaaattgtctcgaagtag 215  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  6353796 atagaaacaaaacatgcaggcattgtaaaattgtctcgaagtag 6353753  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 7562842 - 7562771
Alignment:
Q  136 aaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaa-caaaacatgcagaaattgtaaaattgtc 206  Q
    |||||||||||||| | |||| ||||||| ||||||| | ||| ||||||||| ||||||||||||||||||    
T  7562842 aaaacatgcagaaattttaaaattgtctcaaagtagaaaaaaaacaaaacatggagaaattgtaaaattgtc 7562771  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 6353574 - 6353525
Alignment:
Q  136 aaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaacaaaaca 185  Q
    |||||||||||||| |||||| |||||||||||||| ||| |||||||||    
T  6353574 aaaacatgcagaaattgtaaaattgtctcgaagtaggtagtaacaaaaca 6353525  T

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Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 3011339 - 3011193
Alignment:
Q  56 attaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaattatccatgtagaaacaaaaacatgcagaaaatgtaa 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  3011339 attaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaattatccatgtagaaac-aaaacatgcagaaattgtaa 3011241  T
Q  156 atttgtctcgaagtagatagaaacaaaacatgcag-aaattgtaaaatt 203  Q
    | ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  3011240 aattgtctc-aagtagatagaaacaaaacatgcagaaaattgtaaaatt 3011193  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 215
Target Start/End: Original strand, 8767582 - 8767745
Alignment:
Q  56 attaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaattatccatgtagaaacaaaaacatgcagaaaa-tgta 154  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||| |||||||| ||||||||| ||||| ||||    
T  8767582 attaggattatccaaacatagtctagattctctatccatcaagttatccaaaagaaatcacgattatccacgtagaaac-aaaacatgcggaaaattgta 8767680  T
Q  155 a----atttgtctcgaagtagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtag 215  Q
    |    | |||||| ||| |||   | |||||||||||||||||||||||||||||||| ||||||    
T  8767681 aaattaattgtcttgaattaggcggtaacaaaacatgcagaaattgtaaaattgtctcaaagtag 8767745  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 3011151 - 3011097
Alignment:
Q  161 tctcgaagtagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtag 215  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  3011151 tctcaaagtagataaaaacaaaacatgcagaaattgtaaaattgtcttgaagtag 3011097  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 8767710 - 8767781
Alignment:
Q  136 aaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaa-caaaacatgcagaaattgtaaaattgtc 206  Q
    |||||||||||||| |||||| ||||||| ||||||| | ||| ||||||||| ||||||||||||||||||    
T  8767710 aaaacatgcagaaattgtaaaattgtctcaaagtagaaaaaaaacaaaacatggagaaattgtaaaattgtc 8767781  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 3011267 - 3011232
Alignment:
Q  173 tagaaacaaaacatgcagaaattgtaaaattgtctc 208  Q
    ||||||||||||||||||||||||||||||||||||    
T  3011267 tagaaacaaaacatgcagaaattgtaaaattgtctc 3011232  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 24226967 - 24226864
Alignment:
Q  20 atagggcaaacaattcaaacaaaaagtgaatccaaaattaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaat 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||    ||| ||||||||||||||||||||||||||||    
T  24226967 atagggcaaacaattcaaacaaaaagtcaatccaaaattaggattatccaaacataatatagat----tattcatcaacctatccaaaagaaatcacaat 24226872  T
Q  120 tatccatg 127  Q
    ||||||||    
T  24226871 tatccatg 24226864  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 24226803 - 24226748
Alignment:
Q  160 gtctcgaagtagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtag 215  Q
    |||| ||||||||||| ||||||||||||| ||| | ||||||| |||||||||||    
T  24226803 gtcttgaagtagatagtaacaaaacatgcataaactataaaattatctcgaagtag 24226748  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 425226 - 425131
Alignment:
Q  20 atagggcaaacaattcaaacaaaaagtgaatccaaaattaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaat 119  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||| ||| ||||| |||||    ||||||||||||||||| ||||||||||||||    
T  425226 atagagcaaacaatttaaacaaaaagtcaatccaaaattaggattatcgaaatatagtatagat----tatccatcaacctatcccaaagaaatcacaat 425131  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 425099 - 425055
Alignment:
Q  142 tgcagaaaatgtaaatttgtctcgaagtagatagaaacaaaacat 186  Q
    |||||||| |||||| |||||||||||||||||| | ||||||||    
T  425099 tgcagaaactgtaaaattgtctcgaagtagatagcaccaaaacat 425055  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 17217601 - 17217504
Alignment:
Q  20 atagggcaaacaattcaaacaaaaagtgaatccaaaattaggattatccaaacatagtctagattctctatccatcaacctatccaaaagaaatcacaat 119  Q
    ||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||||| |||           |||||| ||||||||||||||||||||    
T  17217601 atagggcaaacaatttaaacaaaaagtcaatctaaaatttggattatccaaacatagtatag-----------atcaacatatccaaaagaaatcacaat 17217513  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 17217431 - 17217381
Alignment:
Q  136 aaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaacaaaacat 186  Q
    |||||||||||||| |||||| |||||||||||||||||| ||||||||||    
T  17217431 aaaacatgcagaaactgtaaaattgtctcgaagtagatagtaacaaaacat 17217381  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 17215654 - 17215710
Alignment:
Q  159 tgtctcgaagtagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtag 215  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||| | |||||||    
T  17215654 tgtcacgaagtagatagtaacaaaacatgcagaaactgtaaaattgttttgaagtag 17215710  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 17217442 - 17217396
Alignment:
Q  169 tagatagaaacaaaacatgcagaaattgtaaaattgtctcgaagtag 215  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||    
T  17217442 tagatagtaataaaacatgcagaaactgtaaaattgtctcgaagtag 17217396  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 17215675 - 17215725
Alignment:
Q  136 aaaacatgcagaaaatgtaaatttgtctcgaagtagatagaaacaaaacat 186  Q
    |||||||||||||| |||||| |||| | ||||||||||| ||||||||||    
T  17215675 aaaacatgcagaaactgtaaaattgttttgaagtagatagtaacaaaacat 17215725  T

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