View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_high_13 (Length: 567)

Name: NF19658_high_13
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_high_13
NF19658_high_13
[»] chr3 (8 HSPs)
chr3 (93-554)||(31719583-31720044)
chr3 (206-290)||(31011689-31011773)
chr3 (206-290)||(31709549-31709633)
chr3 (1-57)||(31720079-31720135)
chr3 (143-208)||(31712018-31712084)
chr3 (356-405)||(31012172-31012221)
chr3 (356-400)||(31709112-31709156)
chr3 (22-58)||(31719433-31719469)
[»] chr8 (1 HSPs)
chr8 (443-507)||(8935284-8935348)
[»] chr1 (1 HSPs)
chr1 (443-495)||(46767914-46767966)


Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 93 - 554
Target Start/End: Complemental strand, 31720044 - 31719583
Alignment:
Q  93 atcccttttgcaacccaacgaatagggccgagaaaggcattgttaatgtactgaaggaatttaacctttataatagatctagggatatttacaacactat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  31720044 atcccttttgcaacccaacgaatagggccgagaaaggcattgttaatgtactgaaggaatttaacctttataatagatctatggatatttacaacactgt 31719945  T
Q  193 tgaacggtgtgggacttaaacttagacatctcactttatcaggttccactttgagacattcctctattcaatctttaggcttcccagcatgaatagcagc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719944 tgaacggtgtgggacttaaacttagacatctcactttatcaggttccactttgagacattcctctattcaatctttaggcttcccagcatgaatagcagc 31719845  T
Q  293 aattaaacgtctatattcatctcatgaatttcttgttttgcctcaagctttatgaggtagccagtaggacaaaatggtatgtctccaaatgtttgagtaa 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719844 aattaaacgtctatattcatctcatgaatttcttgttttgcctcaagctttatgaggtagccagtaggacaaaatggtatgtctccaaatgtttgagtaa 31719745  T
Q  393 ccatctaatatttttaacaatagtgtcaacttttagctactatgcacatggagaaatttgttgaaagaatctacgctagttatgagttataatttgttgt 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719744 ccatctaatatttttaacaatagtgtcaacttttagctactatgcacatggagaaatttgttgaaagaatctacgctagttatgagttataatttgttgt 31719645  T
Q  493 gttcatttattgagctccaaatacaattaataataaattataatatcaaaataaatctgctg 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719644 gttcatttattgagctccaaatacaattaataataaattataatatcaaaataaatctgctg 31719583  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 31011689 - 31011773
Alignment:
Q  206 acttaaacttagacatctcactttatcaggttccactttgagacattcctctattcaatctttaggcttcccagcatgaatagca 290  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||||||||||    
T  31011689 acttaaacttagacgtctcactttatcaggctccactttgagacattccactattccacctttaggcttcccagcatgaatagca 31011773  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 31709633 - 31709549
Alignment:
Q  206 acttaaacttagacatctcactttatcaggttccactttgagacattcctctattcaatctttaggcttcccagcatgaatagca 290  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||| ||||||    
T  31709633 acttaaacttagacgtctcactttatcaggctccactttgagacattccactattccacctttaggcttcccagcatgtatagca 31709549  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31720135 - 31720079
Alignment:
Q  1 ttttcttatatatattagggttgacaaaaaagatctatatcattatctacacattta 57  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  31720135 ttttcttatatatatttgggttgacaaaaaagatctatatcattatccacacattta 31720079  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 31712084 - 31712018
Alignment:
Q  143 ctgaaggaatttaacctttataatagatctag-ggatatttacaacactattgaacggtgtgggact 208  Q
    |||||||| |||||||||||||||||||||   ||||| |||| |||||||||||||||||||||||    
T  31712084 ctgaaggagtttaacctttataatagatctcttggatacttactacactattgaacggtgtgggact 31712018  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 31012172 - 31012221
Alignment:
Q  356 gtaggacaaaatggtatgtctccaaatgtttgagtaaccatctaatattt 405  Q
    |||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  31012172 gtaggacaaaacagtatgtctccaaatgtttgagtaaccatctaaaattt 31012221  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 31709156 - 31709112
Alignment:
Q  356 gtaggacaaaatggtatgtctccaaatgtttgagtaaccatctaa 400  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  31709156 gtaggacaaaacagtatgtctccaaatgtttgagtaaccatctaa 31709112  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 31719469 - 31719433
Alignment:
Q  22 tgacaaaaaagatctatatcattatctacacatttaa 58  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  31719469 tgacaaaaaaaatctatatcattatccacacatttaa 31719433  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 507
Target Start/End: Original strand, 8935284 - 8935348
Alignment:
Q  443 gagaaatttgttgaaagaatctacgctagttatgagttataatttgttgtgttcatttattgagc 507  Q
    ||||||||||| ||||||||||||  ||||||  | ||||||| |||||||||||||||||||||    
T  8935284 gagaaatttgtggaaagaatctacattagttacaatttataatgtgttgtgttcatttattgagc 8935348  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 495
Target Start/End: Original strand, 46767914 - 46767966
Alignment:
Q  443 gagaaatttgttgaaagaatctacgctagttatgagttataatttgttgtgtt 495  Q
    ||||||||||| |||||||| ||||  |||||||| || ||||||||||||||    
T  46767914 gagaaatttgtcgaaagaatttacgtcagttatgaattttaatttgttgtgtt 46767966  T

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