View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19658_high_14 (Length: 562)
Name: NF19658_high_14
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 316 - 545
Target Start/End: Complemental strand, 2494587 - 2494358
Alignment:
| Q |
316 |
gttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccctccgcccctcacatgcttcttgctctctccgccgcctta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2494587 |
gttctctcaccggagcccaaattcctcttcaccaccaccgatctcatcttcctactacccctccgcccctcacatgcttcttgctctctccgccgcctta |
2494488 |
T |
|
| Q |
416 |
ccggaaaacgttgcagctccaaaccaaactatgttgatgaattctcactctaacaattctagaaagcgtttcaggacaaagtttacacaagatcagaaag |
515 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2494487 |
ccggaaaacgttgcagctccaaaccaaaccatgttgatgaattctcactctaacaattcaagaaagcgtttcaggacaaagtttacacaagatcagaagg |
2494388 |
T |
|
| Q |
516 |
ataagatgctgaaatttgctgagaaagttg |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2494387 |
ataagatgctgaaatttgctgagaaagttg |
2494358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 2494818 - 2494650
Alignment:
| Q |
82 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaacagcaacaccaaccgacccaaca |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2494818 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggctgtggtgaattcatgacatcaccaacagcaacaccaaccgacccaaca |
2494719 |
T |
|
| Q |
182 |
tccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagccaccactc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2494718 |
tccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagccaccactc |
2494650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 3684081 - 3683923
Alignment:
| Q |
82 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaacagcaacaccaaccgacccaaca |
181 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||||||||| || ||| ||||||||||| |||||||||| || || | ||||| | |
|
|
| T |
3684081 |
agaatgtctcaaaaaccacgtggcaaccctaggtggtcatgccctagacggttgttgtgaattcatgccatcaccaaccgccacctccgatgaccctgcc |
3683982 |
T |
|
| Q |
182 |
tccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaaga |
240 |
Q |
| |
|
||| |||||||||| || ||||| || ||||| || ||||||||||||||||| ||||| |
|
|
| T |
3683981 |
tccataaaatgtgccgcatgtggttgtcaccggaatttccaccgccgtgaaccggaaga |
3683923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 82 - 242
Target Start/End: Original strand, 24181069 - 24181229
Alignment:
| Q |
82 |
agaatgtctcaaaaaccatgcagcaaacctaggtggtcatgccctagatggatgtggtgaattcatgacatcaccaac-agcaacaccaaccgacccaac |
180 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||||| ||||| || ||||||||||||||||||||| || || || | ||| |||| ||||| | |
|
|
| T |
24181069 |
agaatgtctcaaaaatcatgctgcatccctaggtggacatgcacttgatggatgtggtgaattcatgccaccatcatctctcaatcccaa-tgaccctag |
24181167 |
T |
|
| Q |
181 |
atccttaaaatgtgctgcttgtggctgccaccgtaacttccaccgccgtgaaccagaagagc |
242 |
Q |
| |
|
|||| | |||||||||||||||||||| ||||| || |||||||||||||| ||| |||||| |
|
|
| T |
24181168 |
atccctcaaatgtgctgcttgtggctgtcaccggaatttccaccgccgtgagccacaagagc |
24181229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 14021876 - 14021837
Alignment:
| Q |
186 |
taaaatgtgctgcttgtggctgccaccgtaacttccaccg |
225 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14021876 |
taaaatgtgctgcttgtaactgccaccgtaacttccaccg |
14021837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University