View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_high_18 (Length: 526)

Name: NF19658_high_18
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_high_18
NF19658_high_18
[»] chr6 (4 HSPs)
chr6 (1-492)||(30489905-30490395)
chr6 (194-411)||(19412757-19412980)
chr6 (254-317)||(19840888-19840951)
chr6 (255-331)||(13117506-13117582)
[»] chr8 (3 HSPs)
chr8 (257-415)||(6821654-6821812)
chr8 (254-332)||(12050844-12050922)
chr8 (483-511)||(42192215-42192243)
[»] chr5 (6 HSPs)
chr5 (258-336)||(11571736-11571814)
chr5 (284-414)||(23780573-23780706)
chr5 (284-414)||(23867526-23867659)
chr5 (249-317)||(11831463-11831531)
chr5 (255-333)||(9890467-9890544)
chr5 (243-299)||(31778639-31778695)
[»] chr7 (6 HSPs)
chr7 (254-336)||(32069067-32069149)
chr7 (243-335)||(37142025-37142117)
chr7 (243-414)||(1556157-1556327)
chr7 (243-317)||(7474475-7474549)
chr7 (254-403)||(1096682-1096830)
chr7 (263-404)||(3877602-3877743)
[»] scaffold0329 (1 HSPs)
scaffold0329 (243-315)||(19551-19623)
[»] chr1 (1 HSPs)
chr1 (243-333)||(39834868-39834959)
[»] scaffold0024 (2 HSPs)
scaffold0024 (200-316)||(139429-139552)
scaffold0024 (373-412)||(139377-139416)
[»] chr2 (1 HSPs)
chr2 (253-309)||(32173110-32173166)
[»] scaffold0351 (1 HSPs)
scaffold0351 (243-330)||(2940-3027)
[»] chr4 (4 HSPs)
chr4 (273-336)||(8023971-8024034)
chr4 (256-333)||(6970620-6970697)
chr4 (255-333)||(19495895-19495973)
chr4 (272-317)||(26144413-26144458)
[»] chr3 (1 HSPs)
chr3 (255-414)||(27056919-27057073)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 30489905 - 30490395
Alignment:
Q  1 actttccaagagagtaaaaatgttgaggagggcactaccatggaaagaccaagccaaggaaaaatcatatatcacacaactacttttaaacccacatgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30489905 actttccaagagagtaaaaatgttgaggagggcactaccatggaaagaccaagccaaggaaaaatcatatatcacacaactacttttaaacccacatgtt 30490004  T
Q  101 gtaaataagtggtcctccgtctccaacttggcaccagatacaactcactacaagaaacaaaagtgatttgcttcggtgcgattagtagctagctcgtaac 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30490005 gtaaataagtggtcctccgtctccaacttggcaccacatacaactcactacaagaaacaaaagtgatttgcttcggtgcgattagtagctagctcgtaac 30490104  T
Q  201 taatttctagcaaaacaagtttagctactgtttagttgtgaatcatactggtagtagcatggattgcgcggaaaattatctaccaaaatatttcctagct 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30490105 taatttctagcaaaacaagtttagctactgtttatttgtgaatcatactgatagtagcatggattgggcggaaaattatctaccaaaatatttcctagct 30490204  T
Q  301 aattggtaactaatattaataaaatcctagctacttccatattagtatgaagcattgtactgttcaacaatttatgtttcctaactatttcgctcggata 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| | |||    
T  30490205 aattggtaactaatattaataaaatcctagctacttccatattaatacgaagcattgtagtgttcaacaatttatgtttcctaactatttcgct-gaata 30490303  T
Q  401 ttgccaaaataattccacactaattccgagaacaagaagtttgagcgtgttgcaattctgaaagaagattcggtggttctgaagtttcatac 492  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30490304 ttgccaaaataattccacactaattccgagaacaagaagtctgagcgtgttgcaattctgaaagaagattcggtggttctgaggtttcatac 30490395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 194 - 411
Target Start/End: Complemental strand, 19412980 - 19412757
Alignment:
Q  194 tcgtaactaatttctagcaaaacaagtttagctactgtttagttgtga-------atcatactggtagtagcatggattgcgcggaaaattatctaccaa 286  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||||       ||||| || || ||||  ||||||| |||| ||||||||||| ||    
T  19412980 tcgtagctaatttctagcaaaacatgtttagctactgtatagttgtgaattacctatcatcctagtcgtagtttggattgggcggcaaattatctactaa 19412881  T
Q  287 aatatttcctagctaattggtaactaatattaataaaatcctagctacttccatattagtatgaagcattgtactgttcaacaatttatgtttcctaact 386  Q
    | |||||||||| ||||| | ||||||| | | | ||||||||||||||| | ||||| || |  |||  |||  ||| |  | |||||||||||||||     
T  19412880 agtatttcctagttaatt-gcaactaatgtaatttaaatcctagctacttacctattaatacgttgcaacgtaacgtttattagtttatgtttcctaacc 19412782  T
Q  387 atttcgctcggatattgccaaaata 411  Q
    |||||||| ||||||||||| ||||    
T  19412781 atttcgctaggatattgccataata 19412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 19840951 - 19840888
Alignment:
Q  254 gtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatatt 317  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||||||||    
T  19840951 gtagcatggattgggcggcaaattatctaccaaaatatttcctagctaattcgcaactaatatt 19840888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 13117506 - 13117582
Alignment:
Q  255 tagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagc 331  Q
    |||||||||||| | || ||||||||||  ||||||||||||||||||||   |||||||||| |||| ||| ||||    
T  13117506 tagcatggattgagtggcaaattatctagtaaaatatttcctagctaattctcaactaatatttataacatcttagc 13117582  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 415
Target Start/End: Original strand, 6821654 - 6821812
Alignment:
Q  257 gcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagctacttccatattagtatgaagcatt 356  Q
    ||||||||||  |||||||||||||| |||||||||||||||| |||||  ||||||   |||||||||| |||||| | || |||||  ||| ||||      
T  6821654 gcatggattggacggaaaattatctatcaaaatatttcctagccaattgacaactaaatctaataaaatcttagctagtcccctattaaaatgtagcaaa 6821753  T
Q  357 gtactgttcaacaatttatgtttcctaactatttcgctcggatattgccaaaataattc 415  Q
    ||| ||||||| | ||||||||||| |||||||||||| ||| |||| || ||||||||    
T  6821754 gtagtgttcaaaagtttatgtttccaaactatttcgctaggacattggcacaataattc 6821812  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 12050922 - 12050844
Alignment:
Q  254 gtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagct 332  Q
    ||||| ||||||| ||||||||||| ||| |  |||||||||||||||| ||| | |||||||| ||||| ||||||||    
T  12050922 gtagcctggattgggcggaaaattacctagcctaatatttcctagctaagtggcatctaatatttataaattcctagct 12050844  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 483 - 511
Target Start/End: Original strand, 42192215 - 42192243
Alignment:
Q  483 agtttcatactccctccgtcccaaattgt 511  Q
    |||||||||||||||||||||||||||||    
T  42192215 agtttcatactccctccgtcccaaattgt 42192243  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 258 - 336
Target Start/End: Complemental strand, 11571814 - 11571736
Alignment:
Q  258 catggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagctactt 336  Q
    ||||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  11571814 catggattaggcggtaaattatctagcaaaatatttcctagctaattggtaactaataaaaataaaatcctagcgactt 11571736  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 414
Target Start/End: Complemental strand, 23780706 - 23780573
Alignment:
Q  284 caaaatatttcctagctaattggtaactaatattaataaaat---cctagctacttccatattagtatgaagcattgtactgttcaacaatttatgtttc 380  Q
    ||||||||||| ||||||||||| |||||||| |||||| ||   | | | |||||||| ||||||  | |||| | || | ||| | | ||||||||||    
T  23780706 caaaatatttcttagctaattggcaactaataataataatatattcttggttacttccaaattagttcgtagcaatatagtcttccaaagtttatgtttc 23780607  T
Q  381 ctaactatttcgctcggatattgccaaaataatt 414  Q
    | |||||||||||| ||||||||| |||||||||    
T  23780606 caaactatttcgctaggatattgctaaaataatt 23780573  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 414
Target Start/End: Complemental strand, 23867659 - 23867526
Alignment:
Q  284 caaaatatttcctagctaattggtaactaatattaataaaat---cctagctacttccatattagtatgaagcattgtactgttcaacaatttatgtttc 380  Q
    ||||||||||| ||||||||||| |||||||| |||||| ||   | | | |||||||| ||||||  | |||| | || | ||| | | ||||||||||    
T  23867659 caaaatatttcttagctaattggcaactaataataataatatattcttggttacttccaaattagttcgtagcaatatagtcttccaaagtttatgtttc 23867560  T
Q  381 ctaactatttcgctcggatattgccaaaataatt 414  Q
    | |||||||||||| ||||||||| |||||||||    
T  23867559 caaactatttcgctaggatattgctaaaataatt 23867526  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 11831531 - 11831463
Alignment:
Q  249 tggtagtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatatt 317  Q
    |||| ||||||||||||| |||  |||||| ||| ||||||||||||||||||| ||| || |||||||    
T  11831531 tggtcgtagcatggattgggcgtcaaattacctatcaaaatatttcctagctaactggcaattaatatt 11831463  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 9890467 - 9890544
Alignment:
Q  255 tagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagcta 333  Q
    |||||||||||| |||| ||||||  ||  |||||||||||||||||| ||| |||||||||| | ||| |||||||||    
T  9890467 tagcatggattgggcggcaaattacatag-aaaatatttcctagctaactggaaactaatatttagaaattcctagcta 9890544  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 31778639 - 31778695
Alignment:
Q  243 tcatactggtagtagcatggattgcgcggaaaattatctaccaaaatatttcctagc 299  Q
    |||||||||  ||||||||||||| |||| |||||||| |  |||||||||||||||    
T  31778639 tcatactggccgtagcatggattgggcggcaaattatcaaataaaatatttcctagc 31778695  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 336
Target Start/End: Original strand, 32069067 - 32069149
Alignment:
Q  254 gtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagctactt 336  Q
    ||||||||||||| |||| |||||||||| |||||||||||||||||| |||| |||||| ||| | |||||||| |||||||    
T  32069067 gtagcatggattgggcggcaaattatctatcaaaatatttcctagctatttggcaactaaaatttaaaaaatccttgctactt 32069149  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 335
Target Start/End: Original strand, 37142025 - 37142117
Alignment:
Q  243 tcatactggtagtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagctact 335  Q
    |||||||||  ||||||||||||| |||||||||||  || |||||||| |||||||||| ||| |||||| ||| | ||| |||||||||||    
T  37142025 tcatactggccgtagcatggattgggcggaaaattacatagcaaaatatctcctagctaaatggaaactaaaatttagaaattcctagctact 37142117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 414
Target Start/End: Complemental strand, 1556327 - 1556157
Alignment:
Q  243 tcatactggtagtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagctacttccatat 342  Q
    |||||||||  |||||||||| || || | |||||| ||| ||||||||| |||||| ||| ||||||||||||| | ||| ||||||||| || || |     
T  1556327 tcatactggctgtagcatggaatgggcagcaaattacctagcaaaatattacctagccaatcggtaactaatatttagaaattcctagctattttcaaac 1556228  T
Q  343 tagtatgaagcattgtactgttcaacaatttatgtttcctaactatttcgctcggatattgccaaaataatt 414  Q
    || ||  |||||   |||| ||||| |||||| ||||||||||||||| |||  ||||||| || |||||||    
T  1556227 taataccaagcaaaatactattcaa-aatttaggtttcctaactatttggctaagatattgacagaataatt 1556157  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 7474549 - 7474475
Alignment:
Q  243 tcatactggtagtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatatt 317  Q
    |||||||||  |||| |||||||| |||| ||||||||||   ||||||||||||||||||| | ||||||||||    
T  7474549 tcatactggccgtagtatggattgggcggcaaattatctagagaaatatttcctagctaatttgcaactaatatt 7474475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 403
Target Start/End: Complemental strand, 1096830 - 1096682
Alignment:
Q  254 gtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagctacttccatattagtatgaagc 353  Q
    ||||||||||||  |||| |||||| | | ||||||||||||||||| ||| | |||||||||| | ||| ||||||||| || || | || ||   |||    
T  1096830 gtagcatggatttggcggcaaattaccaagcaaaatatttcctagcttatttgcaactaatatttaaaaattcctagctattttcaaactaatacctagc 1096731  T
Q  354 attgtactgttcaacaatttatgtttcctaactatttcgctcggatattg 403  Q
    ||  |||| ||||| ||||||  |||||||||||||| ||| ||||||||    
T  1096730 ataatactattcaa-aatttaaatttcctaactatttggctaggatattg 1096682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 404
Target Start/End: Complemental strand, 3877743 - 3877602
Alignment:
Q  263 attgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagctacttccatattagtatgaagcattgtactg 362  Q
    |||| |||| || |||||||  |||||||| ||||||||||| | ||||||||  ||||||||||||||  ||| || | || | || |||| | || ||    
T  3877743 attgggcggcaacttatctaggaaaatattccctagctaattagcaactaataaaaataaaatcctagcggctttcagactaatttgtagcaatatagtg 3877644  T
Q  363 ttcaacaatttatgtttcctaactatttcgctcggatattgc 404  Q
    ||| | | |||||| ||| ||||||||||||| |||||||||    
T  3877643 ttccaaagtttatgattcgtaactatttcgctaggatattgc 3877602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 19623 - 19551
Alignment:
Q  243 tcatactggtagtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaata 315  Q
    |||||||||  ||||||||||||| |||| |||||||| | ||||||||||||||||||||| | ||||||||    
T  19623 tcatactggccgtagcatggattgggcggcaaattatcaatcaaaatatttcctagctaatttgcaactaata 19551  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 39834959 - 39834868
Alignment:
Q  243 tcatactggtagtagcatggattgcg-cggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagcta 333  Q
    |||||||||  ||||||||||||| | ||| |||||  ||| ||||||||||||||||||||||| |||||||||| | ||| |||||||||    
T  39834959 tcatactggccgtagcatggattggggcggcaaattgcctagcaaaatatttcctagctaattggcaactaatatttagaaattcctagcta 39834868  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 139552 - 139429
Alignment:
Q  200 ctaatttctagcaaaacaagtttagctactgtttagttgtga-------atcatactggtagtagcatggattgcgcggaaaattatctaccaaaatatt 292  Q
    ||||||||||||||| || ||||||||||| ||||||| |||       ||||| || |  ||||| || |||| |||| |||||||||| ||||||| |    
T  139552 ctaatttctagcaaagcatgtttagctactatttagttatgacttggctatcattctagccgtagcctgaattgggcggcaaattatctatcaaaataat 139453  T
Q  293 tcctagctaattggtaactaatat 316  Q
    |||||||||| |||||||||||||    
T  139452 tcctagctaactggtaactaatat 139429  T

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Target: scaffold0024; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 412
Target Start/End: Complemental strand, 139416 - 139377
Alignment:
Q  373 tatgtttcctaactatttcgctcggatattgccaaaataa 412  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  139416 tatgtttcctaactatttcgctaggatattgccaaaataa 139377  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 32173166 - 32173110
Alignment:
Q  253 agtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaa 309  Q
    |||||||||||||| |||||||||||||||  ||||||||||||| |||| ||||||    
T  32173166 agtagcatggattgggcggaaaattatctaggaaaatatttcctacctaagtggtaa 32173110  T

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Target: scaffold0351 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 2940 - 3027
Alignment:
Q  243 tcatactggtagtagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctag 330  Q
    |||||||||  || |||||||||| |||| |||||||||| ||||||||||||| ||| |||||||  |||||  |||| ||||||||    
T  2940 tcatactggccgtggcatggattgggcggcaaattatctagcaaaatatttcctggctgattggtatttaataaaaatataatcctag 3027  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 8023971 - 8024034
Alignment:
Q  273 aaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagctactt 336  Q
    ||||||||||  |||||| ||||||| |||||||||||||||||| | |||||| |||||||||    
T  8023971 aaattatctattaaaataattcctaggtaattggtaactaatatttaaaaaatcatagctactt 8024034  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 333
Target Start/End: Original strand, 6970620 - 6970697
Alignment:
Q  256 agcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagcta 333  Q
    ||||||||||| |||| |||||||||||  ||||||||||||||||||| |  |||| ||||  |||| |||||||||    
T  6970620 agcatggattgggcggcaaattatctactgaaatatttcctagctaatttgccactattatttctaaactcctagcta 6970697  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 19495973 - 19495895
Alignment:
Q  255 tagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagcta 333  Q
    |||||||||||| | || ||||||||||  ||||| ||| |||| ||||| | ||||||| ||||||| ||||||||||    
T  19495973 tagcatggattgggtggcaaattatctaggaaaatgtttactagttaatttgcaactaattttaataatatcctagcta 19495895  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 26144458 - 26144413
Alignment:
Q  272 aaaattatctaccaaaatatttcctagctaattggtaactaatatt 317  Q
    |||||||| ||  |||| ||||||||||||||||||||||||||||    
T  26144458 aaaattatatagtaaaagatttcctagctaattggtaactaatatt 26144413  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 414
Target Start/End: Original strand, 27056919 - 27057073
Alignment:
Q  255 tagcatggattgcgcggaaaattatctaccaaaatatttcctagctaattggtaactaatattaataaaatcctagctacttccatattagtatgaagca 354  Q
    |||||||||||| |||| | |||  |||  ||||||||||||||  |||||| |||||||||| | ||| ||||||||| || || | || |||  ||||    
T  27056919 tagcatggattgggcggcacattgcctagaaaaatatttcctagaaaattggcaactaatatttagaaattcctagctattttcaaactaatatctagca 27057018  T
Q  355 ttgtactgttcaacaatttatgtttcctaactatttcgctcggatattgccaaaataatt 414  Q
        ||| ||||| |||| | ||||||||||||||| ||||||||||||||| |||||||    
T  27057019 ----actattcaa-aattcaagtttcctaactatttggctcggatattgccacaataatt 27057073  T

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