View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_high_24 (Length: 500)
Name: NF19658_high_24
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 37169008 - 37169486
Alignment:
| Q |
17 |
tattattgatcctaactttatgcttctccannnnnnnctttcaacaatcctcaaagtaaacatgtcgtcaaggataaagcaaagctaacttgatcaacc- |
115 |
Q |
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| T |
37169008 |
tattattgatcctaactttatgcttctcctttttttt-ttccaacaatcctcaaagtaaacatgtcgtcaaggataaagcaaagctaacttgatcaacca |
37169106 |
T |
|
| Q |
116 |
--ttacacaatcttctttgtttggccattaataaacactagcagatgcatgaaaaattactagcaggattgaccgttgaatagttgacttactaaacctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37169107 |
ccttacacaatcttctttgtttggccattaataaacactagcagatgcataaaaaattactagcaggattgaccgttgaatagttgacttactaaacctt |
37169206 |
T |
|
| Q |
214 |
tttacagaggcgtttcagtcattatagacaatccctatctcagcctgcaaa---------------aaacataaaaagcttcacacaccacagtctgtat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37169207 |
tttacagaggcgtttcagtcattatagacaatccctatctcagcctgcaaaaaaaataaatacaaaaaacataaaaagcttcacacaccacagtctgtat |
37169306 |
T |
|
| Q |
299 |
cacaggctcatgagagtaacctacccagtaatttgtcaaagcttgagctatgcttcaaagaaacctttgccacgtgacaaactttcccttcctcaattcg |
398 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37169307 |
cacacgctcatgagagtaacctacccagtaatttgtcaaagcttgagctatgcttcaaagaaacctttgccacgtgacaaactttcccttcctcaattcg |
37169406 |
T |
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| Q |
399 |
tcacacccctccagggtccctgccctatactactacactgctactttcccctatccctccacacgtgccaaaacacacactcc |
481 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37169407 |
tcacacccctccagggtccctgcccta---tactacactgctactttcccctatccctccacacgtgccaaaacacacactcc |
37169486 |
T |
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