View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_high_34 (Length: 440)
Name: NF19658_high_34
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 5527443 - 5527029
Alignment:
| Q |
7 |
gtaagtttgacatagccggtgtttggtttgacgtggcgtccaaccccttttactcgcgtttgacaactcttccaccgtgataaaatagaagctagaaata |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
5527443 |
gtaagtttgacatagccggtgtttggtttgacgtggcgtccaaccacttttacttcagtttgacaactcttccaccgtgataaaaaagaagctacaaata |
5527344 |
T |
|
| Q |
107 |
atggcttcaaaacaaacgcacgtccgttgccaatttgccgcaaaaacaaacaagctaatactataccgagcaatacaaaatttcaca-------tacttt |
199 |
Q |
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|||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||| |
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| T |
5527343 |
atggttttaaaacaaacgcacgtccgttgccaattttccgcaaaaacaaacaagttaataatataccgagcaatacaaaatttcagaatagttatacttt |
5527244 |
T |
|
| Q |
200 |
gaagatttaataaaattgtgtcatcataatttcgtcaatttaaaccggttcatatattggataatccatggtcagctgaaagcaacaatgaggtattgat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || |||| |
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| T |
5527243 |
aaagatttaataaaattgtgtcatcataatttcgtcaatttaaaccggttcatatattggatgatccatggtcggctgaaagcaacaatgaattactgat |
5527144 |
T |
|
| Q |
300 |
tgacg---actatataagagatcgagacaccacatctccatacaaaaaattgaaaaattgacacctctcatatattaaccattgcacctattcataattg |
396 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
5527143 |
tgacgacaactatataagagatcgagacaccacatctccatctaaaaaattaaaaaattgccacctctcatatattaaccattgcacctattcatagttg |
5527044 |
T |
|
| Q |
397 |
atttttccctcaagt |
411 |
Q |
| |
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||||||||||||||| |
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| T |
5527043 |
atttttccctcaagt |
5527029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 26337594 - 26337703
Alignment:
| Q |
54 |
ttttactcgcgtttgacaactcttccaccgtgataaaatagaagctagaaataatggcttcaaaacaaacgcacgtccgttgccaatttgccgcaaaaac |
153 |
Q |
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| T |
26337594 |
ttttactcgtgtttgacaactcttcctccatattaaaatagaagttaggaatcatgactttaagacaaacacacgtctgttgtcaatttaccgctaaaac |
26337693 |
T |
|
| Q |
154 |
aaacaagcta |
163 |
Q |
| |
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|||||||||| |
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| T |
26337694 |
aaacaagcta |
26337703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 20844290 - 20844182
Alignment:
| Q |
55 |
tttactcgcgtttgacaactcttccaccgtgataaaatagaagctagaaataatggcttcaaaacaaacgcacgtccgttgccaatttgccgcaaaaaca |
154 |
Q |
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| T |
20844290 |
tttactcgtgtttgacaactcttccaccatgataaaatagaagctataaataatggctttaagacaaatgcacatttgttgccaatttgtcgcaaaaaca |
20844191 |
T |
|
| Q |
155 |
aacaagcta |
163 |
Q |
| |
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||||||||| |
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| T |
20844190 |
aacaagcta |
20844182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 14226170 - 14226285
Alignment:
| Q |
48 |
aaccccttttactcgcgtttgacaactcttccaccgtgataaaatagaagctagaaataatggcttcaaaacaaacgcacgtccgttgccaatttgccgc |
147 |
Q |
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|||| ||||||||||| |||||||||||||| || ||||||||||||||||||| |||| | |||| || |||||| ||||| |||| ||||||||||| |
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| T |
14226170 |
aaccacttttactcgcttttgacaactcttctacggtgataaaatagaagctaggaatacttgctttaagacaaacacacgtttgttgtcaatttgccgc |
14226269 |
T |
|
| Q |
148 |
aaaaacaaacaagcta |
163 |
Q |
| |
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||||||||||||||| |
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|
| T |
14226270 |
gaaaacaaacaagcta |
14226285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 163
Target Start/End: Complemental strand, 14372970 - 14372847
Alignment:
| Q |
40 |
tggcgtccaaccccttttactcgcgtttgacaactcttccaccgtgataaaatagaagctagaaataatggcttcaaaacaaacgcacgtccgttgccaa |
139 |
Q |
| |
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|||||||||||| |||||||||| |||||| |||||||| ||| |||||||||||||| ||| |||| ||||| || |||||| |||||||||||||| |
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| T |
14372970 |
tggcgtccaaccacttttactcgtgtttgagaactcttcaaccttgataaaatagaagttaggaatagcggctttaagacaaacacacgtccgttgccat |
14372871 |
T |
|
| Q |
140 |
tttgccgcaaaaacaaacaagcta |
163 |
Q |
| |
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||| ||| ||||||||| |||||| |
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| T |
14372870 |
tttaccgtaaaaacaaataagcta |
14372847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 7783544 - 7783426
Alignment:
| Q |
19 |
tagccggtgtttggtttgacgtggcgtccaaccccttttactcgcgtttgacaactcttccaccgtgataaaatagaagctagaaataatggcttcaaaa |
118 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||| | |||||||| |||| |||||||||||||||||||||||||| |||| | ||| || | |
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| T |
7783544 |
tagccagtgtttggtttga-----cgtccaaccacttttatttgcgtttgagaacttttccaccgtgataaaatagaagctaggaatacggactttaaga |
7783450 |
T |
|
| Q |
119 |
caaacgcacgtccgttgccaattt |
142 |
Q |
| |
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|||||||||||| ||| ||||||| |
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|
| T |
7783449 |
caaacgcacgtctgttaccaattt |
7783426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 10157488 - 10157373
Alignment:
| Q |
47 |
caaccccttttactcgcgtttgacaactcttccaccgtgataaaatagaagctagaaataatggcttcaaaacaaacgcacgtccgttgccaatttgccg |
146 |
Q |
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||||| |||||| |||||||||||||||||| || ||||||||| |||||||| ||| ||| || || ||||||| || | ||||||||||||| | |
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| T |
10157488 |
caaccacttttattcgcgtttgacaactctttcattgtgataaaa-agaagctatgaatggtggatttaagacaaacgtaccacggttgccaatttgctg |
10157390 |
T |
|
| Q |
147 |
caaaaacaaacaagcta |
163 |
Q |
| |
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||||||||||||||||| |
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|
| T |
10157389 |
caaaaacaaacaagcta |
10157373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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