View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_high_52 (Length: 366)
Name: NF19658_high_52
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 36044921 - 36044590
Alignment:
| Q |
18 |
tacttcacgaggattcctcttcatttcgaagttcttgtggcatttcgatctacaaaaccgaaatatctgcacaaaaactttgatgtcaagaagttaaaca |
117 |
Q |
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| T |
36044921 |
tactttacgaggattcctcttcatttcgaagttcttgtggcatttcgatctacaaaaccgaaatatctgcacaaaaactttgatgtcaagaagttaaaca |
36044822 |
T |
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| Q |
118 |
atagtttacatttggattggcagtgagtttgcagaatcagtgtgctagcggcagcgtaattttgacaaaatacttgaaacttcaaaacaaccgcgtgaca |
217 |
Q |
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| T |
36044821 |
atagtttacatttggattggcagtgagtttgcagaatcagtgtgctagcggcagcataattttgacaaaatattcgaaacttcaaaacaaccgcgtgaca |
36044722 |
T |
|
| Q |
218 |
caaaaatttcacaaaactcgccatcaatccaaagtccaaacatgcagatgatataagctttggtttattctgtttcgtttcacttaactcaattccattc |
317 |
Q |
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| T |
36044721 |
cagaaatttcactaaactcgccatcaatccaaagtccaaagatgcagatgatataagctttggtttattcagtttcgtttcacttaactcaattccattc |
36044622 |
T |
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| Q |
318 |
atttaaaaatatccaaagatagtataaggaat |
349 |
Q |
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| T |
36044621 |
atttaaaaatatccaaagatagtataaggaat |
36044590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 20108260 - 20108320
Alignment:
| Q |
25 |
cgaggattcctcttcatttcgaagttcttgtggcatttcgatctacaaaaccgaaatatct |
85 |
Q |
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| T |
20108260 |
cgaggattcctcttcattttgaaatttttgtggcacttggatctacaaaatcgaaaaatct |
20108320 |
T |
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