View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19658_high_55 (Length: 353)
Name: NF19658_high_55
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_55 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 45918650 - 45918554
Alignment:
| Q |
238 |
ccaacttcagtgaagtaaggaagtacaccacccaacttcgagaaattatgcattctttctgcaactaatgcaccactcaatgcaacacagcaaatac |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45918650 |
ccaacttcagtgaagtaaggaagtacaccacccaacttcgagaaattatgcattctttctgcaactaatgcaccactcaatgcaacacaacaaatac |
45918554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 45918718 - 45918687
Alignment:
| Q |
197 |
atcacactatacgcaccatgtggaaagcattg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45918718 |
atcacactatacgcaccatgtggaaagcattg |
45918687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University