View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_high_59 (Length: 339)
Name: NF19658_high_59
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 50441197 - 50441524
Alignment:
| Q |
1 |
actactactaatacatgcacaggtaatgcaaaacatataaattttcaatgcaatgttggtttccttaccacggcctgtgacgaagaagatgaaagccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50441197 |
actactactaatacatgcacaggtaatgcaaaacatataaattttcaatgcaatgttggtttccttaccacggcctgtgacgaagaagatgaaagccttt |
50441296 |
T |
|
| Q |
101 |
cgctatcaaatgagagtgatgtaaattcggtagggatggttgattccaaagacatccttccgtgaatgatagactcaaagctgtagtttacatctgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50441297 |
cgctatcaaatgagagtgatgtaaattcggtagggatggttgattccaaagacatccttccgtgaatgatagactcaaagctgtagtttacatctgattc |
50441396 |
T |
|
| Q |
201 |
tgagctacatgatatccaagggcctggctctgagttgttatgcaatggaggcaacatgcggtccgtactcgaccttccagagcttacaaaagatatgtca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50441397 |
tgagctacatgatatccaagggcctggctctgagttgttatgcaatggaggcaacatgcggtccgtactcgaccttccagagcttacaaaagatatgtca |
50441496 |
T |
|
| Q |
301 |
ccatctggcttataattttccatatatt |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
50441497 |
ccatctggcttataattttccatatatt |
50441524 |
T |
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