View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_high_63 (Length: 314)
Name: NF19658_high_63
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_63 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 20253375 - 20253657
Alignment:
| Q |
13 |
aatataacgcctaaacgtcaggtcaaacgggtcaacatattgggcctaacccgttttccaatccctacnnnnnnnatggatgaggaagaaagaactaggg |
112 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
20253375 |
aatataacaactaaacgtcaggtcaaacgggtcaacatattgggcctaacccgttttccaatccctactttttttatggacgaggaagaaagaactaggg |
20253474 |
T |
|
| Q |
113 |
ttacaagagagaaaggtggctaggtgtatatgcaagataggtagttaaatatcaaattttagatttaagacattgtgttcgtgacaaatcactttaacat |
212 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
20253475 |
ttacaagagagaaaggtggctaggtgtatttgcaagataggtagttaaatatcaaattttagatttaagacatagtgttcgtgacaaatcacttaaacat |
20253574 |
T |
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| Q |
213 |
tttaaaattttataaaatatgaaatattgtatgtttttatcttctctagactgttacc-ttgatacaacccaaaatatgatat |
294 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20253575 |
tttaaaattgtataaaatatgaaatattgtatgtttttgtcttctctagactgttaccgttgatacaacccaaaatatgatat |
20253657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 20432795 - 20433077
Alignment:
| Q |
13 |
aatataacgcctaaacgtcaggtcaaacgggtcaacatattgggcctaacccgttttccaatccctacnnnnnnnatggatgaggaagaaagaactaggg |
112 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
20432795 |
aatataatgcctaaacgtcatgtcaaacgggtcaacatattgggcctaacccgttttccaatccctgctttttttatggacgaggaagaaagaactagga |
20432894 |
T |
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| Q |
113 |
ttacaagagagaaaggtggctaggtgtatatgcaagataggtagttaaatatcaaattttagatttaagacattgtgttcgtgacaaatcactttaacat |
212 |
Q |
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| T |
20432895 |
ttacaagagagaaaggtggctaggtgtatatgcaagataggtagctaaatatcaaattttagatttaagacatagtgttcgtgacaaatcactttaacat |
20432994 |
T |
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| Q |
213 |
tttaaaattttataaaatatgaaatattgtatgtttttatcttctctagactgttacc-ttgatacaacccaaaatatgatat |
294 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20432995 |
tttaaaattgtataaaatatgaaatattgtatgtttttatcttctctagactgttaccattgatacaacccaaaatatgatat |
20433077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 20372730 - 20373013
Alignment:
| Q |
13 |
aatataacgcctaaacgtcaggtcaaacgggtcaacatattgggcctaacccgttttccaatccctacnnnnnnn-atggatgaggaagaaagaactagg |
111 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |
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| T |
20372730 |
aatataacgcctaaacgtcatgtcaaacgggtcaacatattgggcctaacccgttttccaatccctgcttttttttatggatgaggaagaaagaactacg |
20372829 |
T |
|
| Q |
112 |
gttacaagagagaaaggtggctaggtgtatatgcaagataggtagttaaatatcaaattttagatttaagacattgtgttcgtgacaaatcactttaaca |
211 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
20372830 |
attacaagagagaaaggtggataggagtatatgcaagataggtagttaaatatcaaattttagatttaagacatagtgttcgtgacaaatcattttaaca |
20372929 |
T |
|
| Q |
212 |
ttttaaaattttataaaatatgaaatattgtatgtttttatcttctctagactgtta-ccttgatacaacccaaaatatgatat |
294 |
Q |
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| T |
20372930 |
ttttaaaattgtataaaatatgaaatattgtatgtttttatcttctctagactgttacccttgatacaacccaaaatatgatat |
20373013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 20293965 - 20293683
Alignment:
| Q |
15 |
tataacgcctaaacgtcaggtcaaacgggtcaacatattgggcctaacccgttttccaatccctacnnnnnnnatggatgaggaagaaagaactagggtt |
114 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||| |||||||||| || ||||||| |
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| T |
20293965 |
tataacgcctaaacgttaggtcaaacgggtcaacttatagggcctaacccgttttcccatccctactttttt-atggacgaggaagaaataaatagggtt |
20293867 |
T |
|
| Q |
115 |
acaagagagaaaggtggctaggtgtatatgcaagataggtagttaaatatcaaattttagatttaagacattgtgttcgtgacaaatcactttaacattt |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
20293866 |
acaagagagaaaggtggctaggtgtatgtgcaagataggtagaaaaatatgaaattttagatttaagacatagtgtgtgtgacaaatcactttaacattt |
20293767 |
T |
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| Q |
215 |
taaaattttataaaatatgaaatattgtatgtttttatcttctctagactgtta-ccttgatacaacccaaaatatgatatttc |
297 |
Q |
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| T |
20293766 |
taaaactgtataaaatatgaaatattgtatgtttttgtcttctctagactgttacccttgatacaacccaaaatacgatatttc |
20293683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 95 - 297
Target Start/End: Original strand, 20350194 - 20350397
Alignment:
| Q |
95 |
aggaagaaagaactagggttacaagagagaaaggtggctaggtgtatatgcaagataggtagttaaatatcaaattttagatttaagacattgtgttcgt |
194 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||||| ||| |||||| |||||||||||||||||||| |||| || |
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| T |
20350194 |
aggaagaaagaactagggttacaggagagaaaggtggttaggtgtatgttcaagatagatagaaaaatatgaaattttagatttaagacatagtgtgtgt |
20350293 |
T |
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| Q |
195 |
gacaaatcactttaacattttaaaattttataaaatatgaaatattgtatgtttttatcttctctagactgtta-ccttgatacaacccaaaatatgata |
293 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||| |||| ||| |
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| T |
20350294 |
gacaaatcactttaacattttaaaattgtataaaatatgaaatattgtatgtttttgtcttttctagactgttacccttgatacaatccagaatacaata |
20350393 |
T |
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| Q |
294 |
tttc |
297 |
Q |
| |
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|||| |
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|
| T |
20350394 |
tttc |
20350397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 3993745 - 3993687
Alignment:
| Q |
234 |
aaatattgtatgtttttatcttctctagactgtta-ccttgatacaacccaaaatatga |
291 |
Q |
| |
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||||||||||||||||| | ||||||||||||||| |||||||||||| ||||| |||| |
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| T |
3993745 |
aaatattgtatgtttttgtgttctctagactgttacccttgatacaactcaaaacatga |
3993687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 44012851 - 44012915
Alignment:
| Q |
234 |
aaatattgtatgtttttatcttctctagactgttacc-ttgatacaacccaaaatatgatatttc |
297 |
Q |
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|||||| |||||||||| | || | |||||||||||| |||||||||||||||| |||||||||| |
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| T |
44012851 |
aaatatcgtatgtttttgtattttttagactgttacccttgatacaacccaaaacatgatatttc |
44012915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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