View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_high_67 (Length: 305)
Name: NF19658_high_67
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_high_67 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 21044040 - 21044317
Alignment:
| Q |
19 |
gttacctttgcccctaaaatacgcgtcatgacttagaaaataatggtaactcatgaattttttaatcggnnnnnnngaaa-taaagaatagcattataac |
117 |
Q |
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| T |
21044040 |
gttacctttgcccctaaaatacgtgtcatgacttagaaaataatggtaactcatgaatttttgaatcggtttttttgaaaataaagaatagcattataac |
21044139 |
T |
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| Q |
118 |
taatcaaatttgcaggccaaattaacataaagatatactccaccgacacattaatttgaaaatagaatttagtggattcatttgccgttttgttggtgct |
217 |
Q |
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| T |
21044140 |
tcatcaaatttgcaggccaaattaacataaagatatactccaccgacacattaatttgaaaatagaatttagtggattcatttgccgttttgttggtgct |
21044239 |
T |
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| Q |
218 |
atttctactattgattgtaactaaatctagaagaagttcatttaaggtctcacatttcaactaaacgtgttacctttg |
295 |
Q |
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| T |
21044240 |
atttctactgctgattgtaactaaatctagaagaagttcatttaaggtctcacatttcaactaaacgtgttacctttg |
21044317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 97 - 289
Target Start/End: Complemental strand, 26378928 - 26378734
Alignment:
| Q |
97 |
aataaagaatagcattataactaatcaaatttgcaggccaaattaacataaagatatactccaccgacacattaatttgaaaatagaatttagtggattc |
196 |
Q |
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| T |
26378928 |
aataaagaatagcattaaaaatcatcaaatttgcaggccaaattaacataaaactatacttcaccgacatattaatttgaaatttgaacttagtggatca |
26378829 |
T |
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| Q |
197 |
atttgccgttttgttggtgctatttctactattgattgtaactaaatctagaaga--agttcatttaaggtctcacatttcaactaaacgtgtta |
289 |
Q |
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| T |
26378828 |
atttgccgttttgttggttctatttctactactgattataactaaatctagaagttcatttacttgaaggtctcatatttcaactaaacgtgtta |
26378734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 26378983 - 26378926
Alignment:
| Q |
19 |
gttacctttgcccctaaaatacgcgtcatgacttagaaaataatggtaactcatgaat |
76 |
Q |
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| T |
26378983 |
gttacctttgcccctaaaatacgcgtcatgacttagaaaataatggttactcatgaat |
26378926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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