View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_high_8 (Length: 623)

Name: NF19658_high_8
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_high_8
NF19658_high_8
[»] chr4 (56 HSPs)
chr4 (1-604)||(27571395-27571997)
chr4 (162-602)||(27418996-27419435)
chr4 (160-472)||(27411379-27411690)
chr4 (148-484)||(27414212-27414550)
chr4 (148-479)||(27567154-27567485)
chr4 (147-479)||(27421841-27422176)
chr4 (158-479)||(27424432-27424755)
chr4 (243-401)||(27556384-27556542)
chr4 (239-400)||(27478884-27479045)
chr4 (239-400)||(27485944-27486105)
chr4 (239-352)||(27506724-27506837)
chr4 (239-353)||(27412689-27412803)
chr4 (197-394)||(27513735-27513932)
chr4 (239-351)||(27444795-27444907)
chr4 (200-351)||(27431110-27431261)
chr4 (239-336)||(27563347-27563444)
chr4 (239-394)||(27486967-27487122)
chr4 (239-349)||(27585717-27585827)
chr4 (239-329)||(27595434-27595524)
chr4 (239-396)||(27559241-27559398)
chr4 (200-352)||(27425838-27425990)
chr4 (243-351)||(27557516-27557624)
chr4 (239-394)||(27526113-27526268)
chr4 (239-394)||(27479885-27480040)
chr4 (240-359)||(27501336-27501455)
chr4 (239-394)||(27505703-27505858)
chr4 (258-400)||(27527139-27527281)
chr4 (237-394)||(27498399-27498556)
chr4 (239-336)||(27503964-27504061)
chr4 (239-394)||(27476671-27476826)
chr4 (240-323)||(27554364-27554447)
chr4 (239-349)||(27415650-27415760)
chr4 (239-336)||(27468328-27468425)
chr4 (239-336)||(27475580-27475677)
chr4 (243-336)||(27524566-27524659)
chr4 (242-334)||(27490004-27490096)
chr4 (240-336)||(27514933-27515029)
chr4 (239-401)||(27446124-27446286)
chr4 (239-336)||(27420450-27420547)
chr4 (239-400)||(27497323-27497484)
chr4 (200-349)||(27565913-27566062)
chr4 (239-336)||(27570050-27570147)
chr4 (240-352)||(27502809-27502921)
chr4 (239-334)||(17970343-17970438)
chr4 (240-286)||(27507815-27507861)
chr4 (239-289)||(27600642-27600692)
chr4 (239-336)||(27423264-27423361)
chr4 (237-282)||(27473988-27474033)
chr4 (239-282)||(27460574-27460617)
chr4 (239-282)||(27466917-27466960)
chr4 (239-394)||(27469444-27469599)
chr4 (239-294)||(27495620-27495675)
chr4 (243-334)||(27508896-27508987)
chr4 (243-289)||(27577407-27577453)
chr4 (506-547)||(27567089-27567130)
chr4 (239-295)||(27502136-27502192)
[»] chr5 (3 HSPs)
chr5 (239-394)||(1756758-1756913)
chr5 (210-409)||(1755967-1756166)
chr5 (240-394)||(1754243-1754397)
[»] chr3 (16 HSPs)
chr3 (239-394)||(55084770-55084925)
chr3 (243-400)||(38032260-38032417)
chr3 (243-400)||(38035033-38035190)
chr3 (243-400)||(38038525-38038682)
chr3 (243-400)||(50913474-50913631)
chr3 (243-400)||(38027433-38027590)
chr3 (239-352)||(38043929-38044042)
chr3 (239-394)||(38024876-38025031)
chr3 (239-394)||(38031328-38031483)
chr3 (239-334)||(50910004-50910099)
chr3 (239-394)||(50911870-50912025)
chr3 (239-285)||(48840713-48840759)
chr3 (239-296)||(38028767-38028824)
chr3 (239-331)||(50904793-50904885)
chr3 (239-394)||(38036794-38036949)
chr3 (239-296)||(38040082-38040139)
[»] chr8 (3 HSPs)
chr8 (243-400)||(21608235-21608392)
chr8 (239-313)||(21634608-21634682)
chr8 (239-296)||(21607297-21607354)
[»] chr2 (1 HSPs)
chr2 (239-334)||(3073613-3073708)


Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 27571997 - 27571395
Alignment:
Q  1 gcaactgtttcaacaatatttggtgtcattaataatttaacattctcattcaggaaacattttgatttccgtaggaatgattgattaatacatggacgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571997 gcaactgtttcaacaatatttggtgtcattaataatttaacattctcattcaggaaacattttgatttccgtaggaatgattgattaatacatggacgga 27571898  T
Q  101 acaataaaaaaatcttcaacagnnnnnnnnnnnntggtttctatagtaattagcttcaactaatctatctaaatctccattagcatgatctagagctcaa 200  Q
    ||||||||||| ||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571897 acaataaaaaa-tcttcaacagaaaaaaaaaa--tggtttctatagtaattagcttcaactaatctatctaaatctccattagcatgatctagagctcaa 27571801  T
Q  201 ttcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgattta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  27571800 ttcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgattta 27571701  T
Q  301 gtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    |||||||||||||  |||| ||| |||| ||||||| ||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  27571700 gtaattcttgaaacgatggctggctcaaatatgatactggaatcacgaaccgcctcattctatctccaacatagactgcgagatagccttttgggacttc 27571601  T
Q  401 aagtcccttggtagattcttgtgttttggaaaatgatggcattctgataagctttgctatgcggaaacccattgtttttattatttatggttcctcac-- 498  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||      
T  27571600 aagtcccttggcagtctcttgtgttttggaaaatgatggcattctgataagctttgctatgcggaaacccattgtttttagtatttatggttcctcacaa 27571501  T
Q  499 nnnnnnntactgatgatggcagaggattggatgagaaagaaatatttgagtttttataactcagaatggaaaagatttgtgttgctttgagaactcaagg 598  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571500 aaaaaaatactgatgatggcagaggattggatgagaaagaaatatttgagtttttataactcagaatggaaaagatttgtgttgctttgagaactcaagg 27571401  T
Q  599 aatagt 604  Q
    ||||||    
T  27571400 aatagt 27571395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 162 - 602
Target Start/End: Original strand, 27418996 - 27419435
Alignment:
Q  162 aatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccaccca 261  Q
    ||||||||| |||||||||||||||||| || |  ||| || ||||||||||| || | || |||  |||| || |||||||||||||| ||||||||||    
T  27418996 aatctatcttaatctccattagcatgatttacaaatcactt-aagcgagaagtgagttgtaagaaagcatcttcaccgcaaggaattgtaagaccaccca 27419094  T
Q  262 taggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctcattct 361  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||  |||| ||| |||| ||||||| ||||||||| ||||| ||||||||    
T  27419095 ttggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatactggaatcacgaaccgcctcattct 27419194  T
Q  362 atcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctgataagctttgctatg 461  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  27419195 atctccaacatagactgcgagatagccttttgggacttcaagtcccttggcagtctcttgtgttttggaaaatgatggcattctgataagctttgctatg 27419294  T
Q  462 cggaaacccattgtttttattatttatggttcctcacnnnnnnntactgatgatggcagaggattggatgagaaagaaatatttgagtttttataactca 561  Q
    ||||||||||||||||||||||| ||||| |||||||       |||||||||||||||||||||||||||||||||||||||||| || |||||| |||    
T  27419295 cggaaacccattgtttttattatgtatggctcctcacaaaaagatactgatgatggcagaggattggatgagaaagaaatatttgaattcttataattca 27419394  T
Q  562 gaatggaaaagatttgtgttgctttgagaactcaaggaata 602  Q
    ||||| ||||||||| ||||| ||||||||  |||||||||    
T  27419395 gaatgcaaaagatttatgttgatttgagaatccaaggaata 27419435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 160 - 472
Target Start/End: Original strand, 27411379 - 27411690
Alignment:
Q  160 ctaatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacc 259  Q
    ||||||||||| ||||||||||||| |||| || || ||| | ||| ||||| || || ||| ||||||||||||||| |||||||||||||||||||||    
T  27411379 ctaatctatcttaatctccattagcttgatttacagttcact-caaacgagatgtgaggttttggaattcatcctcgctgcaaggaattgtgagaccacc 27411477  T
Q  260 cataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctcatt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||| ||||||||||||    
T  27411478 cataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgatactggaatcacgaaccgtctcatt 27411577  T
Q  360 ctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctgataagctttgcta 459  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27411578 ctatctccaacatagactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctaataagctttgcta 27411677  T
Q  460 tgcggaaacccat 472  Q
    |||||||||||||    
T  27411678 tgcggaaacccat 27411690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 148 - 484
Target Start/End: Original strand, 27414212 - 27414550
Alignment:
Q  148 aattagcttcaactaatctatctaaatctccattagcatgat--ctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaagga 245  Q
    ||||||| |||||||||||||||||| |||| ||||||| ||  ||| ||||||||||| ||||||||| || ||| |||||||||| || | ||| |||    
T  27414212 aattagcctcaactaatctatctaaagctccgttagcataatatctacagctcaattcatgcgagaagtgaggttttggaattcatcttcactgcacgga 27414311  T
Q  246 attgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatca 345  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||  |||||||    
T  27414312 attgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagtatgatacaggaatca 27414411  T
Q  346 caaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattct 445  Q
    |||||||||||||| |||| ||||| || ||||| |||||||||||||| ||||||| ||||||| ||||| ||||||||   |||||||||||| ||||    
T  27414412 caaaccgtctcattttatctccaacgtagactgcaagatagccttttggcacttcaaatcccttgctagatgcttgtgttgacgaaaatgatggctttct 27414511  T
Q  446 gataagctttgctatgcggaaacccattgtttttattat 484  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  27414512 gataagctttgctatgcggaaacccattgttttttttat 27414550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 148 - 479
Target Start/End: Complemental strand, 27567485 - 27567154
Alignment:
Q  148 aattagcttcaactaatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaat 247  Q
    ||||||| ||||||| |||||||||||||||||| |||||| ||  ||||||||||||| ||||||| || | || |||  |||| |||| |||||||||    
T  27567485 aattagcctcaactattctatctaaatctccatttgcatgaccttcagctcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaat 27567386  T
Q  248 tgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcaca 347  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||     
T  27567385 tgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaagtatgatactggaatcacg 27567286  T
Q  348 aaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctga 447  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||| | || |||    
T  27567285 aaccgtctcattctatctccaacatagactgcgagatagccttttgggacttcaaatcccttgctagatccttgagttttggaaaatgatgcccttttga 27567186  T
Q  448 taagctttgctatgcggaaacccattgttttt 479  Q
    |||   | ||||| ||||||||||||||||||    
T  27567185 taatactggctatacggaaacccattgttttt 27567154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 147 - 479
Target Start/End: Original strand, 27421841 - 27422176
Alignment:
Q  147 taattagcttcaactaatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaa 246  Q
    |||||||| | ||||||||||||||| |||  ||||||||||| ||  ||||||||||| |||||||| || | || |||   ||| || | ||||||||    
T  27421841 taattagccttaactaatctatctaagtctg-attagcatgatttacggctcaattcaatcgagaagtgagttgtaagaaagaatcttcactgcaaggaa 27421939  T
Q  247 ttgtgagaccacccataggatgatcatatcc----aaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 342  Q
    |||||||||||||| | |||||||| |||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27421940 ttgtgagaccacccgttggatgatcgtatccatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgatactggaa 27422039  T
Q  343 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcat 442  Q
    |||| |||||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||| |||  |||||||||||||||    
T  27422040 tcacgaaccgtttcattctatctccaacatagactgcgagatagccttttgggacttcaaatcccttggtagatgcttgcgttgaggaaaatgatggcat 27422139  T
Q  443 tctgataagctttgctatgcggaaacccattgttttt 479  Q
    ||||||||| |||||||||||||||||||||||||||    
T  27422140 tctgataagttttgctatgcggaaacccattgttttt 27422176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 158 - 479
Target Start/End: Original strand, 27424432 - 27424755
Alignment:
Q  158 aactaatctatctaaatctccattagcatgat--ctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagac 255  Q
    ||||||||||| | |||||| |||||||||||  ||| ||||||||||| ||||||||| || ||| ||||||||||||||| ||| ||||| || ||||    
T  27424432 aactaatctatattaatctctattagcatgatatctacagctcaattcatgcgagaagtgaggtttcggaattcatcctcgctgcacggaatggtaagac 27424531  T
Q  256 cacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtct 355  Q
    ||||||| ||||||||||||||| |||||||||| | ||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||| ||    
T  27424532 cacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgatactggaatcacaaaccgcct 27424631  T
Q  356 cattctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctgataagcttt 455  Q
    ||||  ||| |||||||| |||||||||||||||||||||||||| | ||| ||  ||||| ||||||||   |||||||||||||||||||||||||||    
T  27424632 catttgatctccaacatagactgcgagatagccttttgggacttcgaatcctttactagatgcttgtgttgacgaaaatgatggcattctgataagcttt 27424731  T
Q  456 gctatgcggaaacccattgttttt 479  Q
    ||||||||||||||||||||||||    
T  27424732 gctatgcggaaacccattgttttt 27424755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 243 - 401
Target Start/End: Original strand, 27556384 - 27556542
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 342  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||  |||| |  ||||    
T  27556384 ggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggttggttcaataatgaaatgggaa 27556483  T
Q  343 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttca 401  Q
    ||||||| ||  ||||| | || |||||||| |||||||||||||||||||||||||||    
T  27556484 tcacaaatcgcttcattttttctccaacataaactgcgagatagccttttgggacttca 27556542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 239 - 400
Target Start/End: Original strand, 27478884 - 27479045
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||| |    
T  27478884 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatatt 27478983  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    || |  ||||||||  ||  | | || |||||||||||||| | |||||| ||||| |||||    
T  27478984 gggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttggaacttc 27479045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 239 - 400
Target Start/End: Original strand, 27485944 - 27486105
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||| |    
T  27485944 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatatt 27486043  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    || |  ||||||||  ||  | | || |||||||||||||| | |||||| ||||| |||||    
T  27486044 gggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttggaacttc 27486105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 239 - 352
Target Start/End: Complemental strand, 27506837 - 27506724
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||| |||||||||| |    
T  27506837 gcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatatt 27506738  T
Q  339 ggaatcacaaaccg 352  Q
    || |||||||||||    
T  27506737 gggatcacaaaccg 27506724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 239 - 353
Target Start/End: Complemental strand, 27412803 - 27412689
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| |||||||| |||||| | | ||| ||||||||||||||||||||||||||||||| |    
T  27412803 gcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatatt 27412704  T
Q  339 ggaatcacaaaccgt 353  Q
    || ||||||||||||    
T  27412703 gggatcacaaaccgt 27412689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 197 - 394
Target Start/End: Original strand, 27513735 - 27513932
Alignment:
Q  197 tcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttga 296  Q
    |||||||||||||||||| | || || |||| | || || | ||||||||| |||||||||||||| |||||||||||| || ||| |||||| |||||     
T  27513735 tcaattcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttgg 27513834  T
Q  297 tttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    || |  |||||||| ||  | | ||||||||||||||||| ||| |||||||||||  ||||| | || || ||||||||||| ||||| ||||||||    
T  27513835 ttcaacaattcttggaacgaggtttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttgg 27513932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 27444795 - 27444907
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    |||||||||||||||||||||||| ||||| |||||||| |||| ||| || |||||||| | ||||||||||||| ||| |||| |||||||||||| |    
T  27444795 gcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatatt 27444894  T
Q  339 ggaatcacaaacc 351  Q
    || ||||||||||    
T  27444895 gggatcacaaacc 27444907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 200 - 351
Target Start/End: Original strand, 27431110 - 27431261
Alignment:
Q  200 attcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgattt 299  Q
    |||||| |||||||||| ||||| |||  | || || | |||||||||||||||||||||  | ||||| ||||||||||||| ||| || ||||||||     
T  27431110 attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattc 27431209  T
Q  300 agtaattcttgaaataatggttggttcaagtatgataatggaatcacaaacc 351  Q
    |  |||||||||||| | ||||||||||||||||||| ||| ||||||||||    
T  27431210 aacaattcttgaaatgacggttggttcaagtatgatattgggatcacaaacc 27431261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 27563347 - 27563444
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||| | || || |||||||| |||| |||||||||||||||||    
T  27563347 gcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgata 27563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 27487122 - 27486967
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| || ||||||||||| |||||||||||| |||||| |||||| ||||| || |  |||||||||||  |||||||||| |||||||||||     
T  27487122 gcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggttggtttaagtatgataaa 27487023  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    || |||||||||||  ||||| | || || || |||||||| ||||| || |||||    
T  27487022 gggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27486967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 27585827 - 27585717
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||| | |  || |||||||| ||||||||||||||||||||||      
T  27585827 gcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttgaaacaatggttggttcaagtatgatacg 27585728  T
Q  339 ggaatcacaaa 349  Q
    || ||||||||    
T  27585727 gggatcacaaa 27585717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 239 - 329
Target Start/End: Complemental strand, 27595524 - 27595434
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaag 329  Q
    |||||||||||| ||||||||||| |||||||   ||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  27595524 gcaaggaattgtaagaccacccatgggatgattgaatccaaactctttttctgcttgacttagtaattcttgaaataatggtcggttcaag 27595434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 239 - 396
Target Start/End: Original strand, 27559241 - 27559398
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||  ||| ||| | ||||||| | | ||| |||||  |||| |      
T  27559241 gcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttctgattggcttaataactattgaaatgaagattgattcaataatgaaata 27559340  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttggga 396  Q
    ||||||| ||| |   ||||| | || |||||||| ||||||||||||||||||||||    
T  27559341 ggaatcagaaatctcttcattttgtctccaacataaactgcgagatagccttttggga 27559398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 200 - 352
Target Start/End: Complemental strand, 27425990 - 27425838
Alignment:
Q  200 attcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgattt 299  Q
    |||||||||||| || | || | | ||| ||||||||  ||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||   |||| |     
T  27425990 attcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattgactc 27425891  T
Q  300 agtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccg 352  Q
    | ||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||    
T  27425890 aataagtcttgaaatgatggttggttcaagtatgatattgggatcacataccg 27425838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 243 - 351
Target Start/End: Complemental strand, 27557624 - 27557516
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 342  Q
    ||||| |||||||||||||| |||||| ||||| |||||| ||| || |||||||| || |||||||||||| |||||||||| |||||||| | ||| |    
T  27557624 ggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggttggtttaagtatgacattggga 27557525  T
Q  343 tcacaaacc 351  Q
    |||||||||    
T  27557524 tcacaaacc 27557516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 27526113 - 27526268
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| |||||||||||| | |||||||||||| |||||| ||| || |||||  | |  |||||||| ||| | | |||||||||||||||||      
T  27526113 gcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttggaatgaggtttggttcaagtatgataca 27526212  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    ||||||||||||||  ||||| | || |||||||||||||| ||||| || |||||    
T  27526213 ggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttgg 27526268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 27480040 - 27479885
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| |||||||||||||| |||||||||||| |||||| ||| || ||||| || |  || | ||| ||| ||| |||||||||||||||||      
T  27480040 gcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgtttggttcaagtatgataca 27479941  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    ||||||||||| ||  ||||| | || || || || ||||| ||||||||||||||    
T  27479940 ggaatcacaaaacgcttcattttctctcctacgtatactgctagatagccttttgg 27479885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 27501455 - 27501336
Alignment:
Q  240 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatg 339  Q
    |||||||| |||||||||||| | |||||||| ||| |||||| ||| || ||||| || |  || |||||||| ||||||||||| |||||||||| ||    
T  27501455 caaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttgaaacaatggttggtttaagtatgatattg 27501356  T
Q  340 gaatcacaaaccgtctcatt 359  Q
    | |||||||||||| |||||    
T  27501355 ggatcacaaaccgtttcatt 27501336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 27505703 - 27505858
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| |||||||||||||| ||||| |||||| |||||| ||| || ||||| || |  |||||||| ||| | | |||||||||||||||||      
T  27505703 gcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgaggtttggttcaagtatgataca 27505802  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    ||||||||||||||  ||||| | || || || |||||||| ||||| || |||||    
T  27505803 ggaatcacaaaccgcttcattttctctcctacgtacactgctagatacccctttgg 27505858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 400
Target Start/End: Complemental strand, 27527281 - 27527139
Alignment:
Q  258 cccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctca 357  Q
    ||||| ||||||||||||||||| ||||| || |||||| | || || ||| ||||  |||||||||| |||| ||||| ||| |||||||||||| ||     
T  27527281 cccatgggatgatcatatccaaactcttcctcagcttgactcagcaactctagaaacgatggttggtttaagtgtgatattgggatcacaaaccgtttct 27527182  T
Q  358 ttctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
     | |||| ||||||||||| || |||||||| ||||| |||||    
T  27527181 gtttatctccaacatacaccgcaagatagccctttggtacttc 27527139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 237 - 394
Target Start/End: Complemental strand, 27498556 - 27498399
Alignment:
Q  237 ccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    ||||||||||| |||||||||||||| |||||||||||| | |||| ||| || ||||| || |  || ||||| ||  |||||||||||||||||||||    
T  27498556 ccgcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtcttggaacgatggttggttcaagtatgata 27498457  T
Q  337 atggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
      || |||||||| ||| |||||   || |||||||| ||||| ||||| || |||||    
T  27498456 tagggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttgg 27498399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 27504061 - 27503964
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||| | |  || ||||||||| | |||||||||||||||||||    
T  27504061 gcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 27476826 - 27476671
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| || ||||||||||| |||||||||||| |||||| ||| ||   |||  | || | |||||| ||| | | |||||||||||||||||      
T  27476826 gcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaatgaggtttggttcaagtatgataca 27476727  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    ||||||||||||||  ||||| | || |||||||||||||| ||||| || |||||    
T  27476726 ggaatcacaaaccgcttcattttctcaccaacatacactgctagatatccctttgg 27476671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 27554447 - 27554364
Alignment:
Q  240 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttgg 323  Q
    |||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||| || |||||||||||  ||||||||    
T  27554447 caaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaacgatggttgg 27554364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 27415760 - 27415650
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| ||||| |||||||| | ||||||||||||||| ||||| || |||||| | |  || ||||||||  |||||||||||||||||||||      
T  27415760 gcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagtatgatatg 27415661  T
Q  339 ggaatcacaaa 349  Q
    || ||||||||    
T  27415660 gggatcacaaa 27415650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 27468328 - 27468425
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||||| || | |||| | |  || ||||||||| | |||||||| ||||||||||    
T  27468328 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttggtttaagtatgata 27468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 27475580 - 27475677
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||| | |  || ||||||||| | ||||| |||||||||||||    
T  27475580 gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 27524659 - 27524566
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |  || ||||||||| | ||||||||||| |||||||    
T  27524659 ggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtcttgaaatgaaggttggttcaaatatgata 27524566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 27490096 - 27490004
Alignment:
Q  242 aggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 334  Q
    |||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |  || ||||||||| |||||| ||| ||||||||    
T  27490096 aggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaatgatggtttgtttaagtatga 27490004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 27515029 - 27514933
Alignment:
Q  240 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||||| || | |||| | |  || ||||||||| | ||||| |||||||||||||    
T  27515029 caaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 239 - 401
Target Start/End: Complemental strand, 27446286 - 27446124
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| | ||||||| ||||  ||||||||||| |||| |||||||||| |||  |||   | ||||||||| | ||||| |||||  ||||   |    
T  27446286 gcaaggaatcgagagaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagtt 27446187  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttca 401  Q
    ||||||||||| ||  ||||| | || |||||||| || || |||||||||||||||||||||    
T  27446186 ggaatcacaaatcgcttcattttttctccaacataaaccgcaagatagccttttgggacttca 27446124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 27420547 - 27420450
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||  ||||| | || ||  |||||||| | |||||| ||||||||||||    
T  27420547 gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagccttgaaatgaaggttggctcaagtatgata 27420450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 400
Target Start/End: Original strand, 27497323 - 27497484
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| ||||| |||||  | ||||||||||||||||| ||||| || |||||| | |  || | |||||| ||||||||||| |||||||| |      
T  27497323 gcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatattgaaacaatggttggtttaagtatgagata 27497422  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    || |||||||||||  |   | |||| |||||||||||||| | |||||| ||||| |||||    
T  27497423 gggatcacaaaccgcttttgtttatctccaacatacactgcaacatagccctttggaacttc 27497484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 349
Target Start/End: Original strand, 27565913 - 27566062
Alignment:
Q  200 attcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgattt 299  Q
    |||||||| |||||| | || | ||||  |||| ||||| |||||||| ||||| |||||||| |||||||||||||||   ||||| ||  ||||  |     
T  27565913 attcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggccacccattggatgatcatatccatgctcttcctcaacttgtatc 27566012  T
Q  300 agtaattcttgaaataatggttggttcaagtatgataatggaatcacaaa 349  Q
    || || |||||||| ||||||||||||| ||||||||  || ||||||||    
T  27566013 agcaagtcttgaaacaatggttggttcaggtatgatatggggatcacaaa 27566062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 27570050 - 27570147
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    ||||||||| ||||| |||||||| |||||||||||||| || ||||| || |||||| | || || ||||||||| | |||||| | ||||||||||    
T  27570050 gcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaatgaaggttggcttaagtatgata 27570147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 27502809 - 27502921
Alignment:
Q  240 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatg 339  Q
    |||||||| || ||||||||||| ||||| |||||||||||||||||  | |||||  | || || ||||||||| | | ||| ||||| ||||| | ||    
T  27502809 caaggaatagtaagaccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattg 27502908  T
Q  340 gaatcacaaaccg 352  Q
    |||||||||||||    
T  27502909 gaatcacaaaccg 27502921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 17970438 - 17970343
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 334  Q
    ||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||  || | || || | ||||||| | | |||||||||||||||    
T  17970438 gcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaagtatga 17970343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 27507815 - 27507861
Alignment:
Q  240 caaggaattgtgagaccacccataggatgatcatatccaaattcttc 286  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  27507815 caaggaattgtaagaccacccattggatggtcatatccaaattcttc 27507861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 27600692 - 27600642
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttc 289  Q
    |||||||||||||||||||||||| |||||||  || ||||||||||||||    
T  27600692 gcaaggaattgtgagaccacccattggatgattgtaaccaaattcttcttc 27600642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 27423361 - 27423264
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 336  Q
    ||||||||  ||||| |||||||| |||||||  || ||||| ||||| || |||||| | |  |||||||||||| | |||||||||||||||||||    
T  27423361 gcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattcttgaaatgaaggttggttcaagtatgata 27423264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 27474033 - 27473988
Alignment:
Q  237 ccgcaaggaattgtgagaccacccataggatgatcatatccaaatt 282  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||    
T  27474033 ccgcaaggaatggtgagaccacccattggatgatcatattcaaatt 27473988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 27460617 - 27460574
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaatt 282  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  27460617 gcaaggaatggtgagaccacccattggatgatcatattcaaatt 27460574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 27466960 - 27466917
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaatt 282  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  27466960 gcaaggaatagtgagaccacccattggatgatcatattcaaatt 27466917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 27469599 - 27469444
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| || ||||||||||| ||||| |||||| |||||| |||||| |||||  | |  | |||||| ||| ||| ||| ||||| |||||||      
T  27469599 gcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatgatgtttgcttcaaatatgatata 27469500  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    || |||||||||||  ||||| | || || || |||||||| ||||| || |||||    
T  27469499 gggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27469444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 27495675 - 27495620
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgctt 294  Q
    ||||||||| |||||||||||||| ||||||| | ||||||| |||||||| ||||    
T  27495675 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 27495620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 27508987 - 27508896
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 334  Q
    ||||| ||||| |||||| | ||||||||||||||||| ||||| || || ||||| |  || ||||||||| | ||||||||||| |||||    
T  27508987 ggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagcctgattcaacaagtcttgaaatgaaggttggttcaaatatga 27508896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 27577453 - 27577407
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttc 289  Q
    ||||||||||||||||||||||| ||||   ||||||||||||||||    
T  27577453 ggaattgtgagaccacccatagggtgattgaatccaaattcttcttc 27577407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 547
Target Start/End: Complemental strand, 27567130 - 27567089
Alignment:
Q  506 tactgatgatggcagaggattggatgagaaagaaatatttga 547  Q
    ||||||| |||  |||||||||||||||||||||||||||||    
T  27567130 tactgattatgttagaggattggatgagaaagaaatatttga 27567089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 27502136 - 27502192
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttg 295  Q
    ||||||||| || ||||||||||| |||||||||||| |||||| ||| || |||||    
T  27502136 gcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcagcttg 27502192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 1756758 - 1756913
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| ||||| |||||||| || ||||||||||||||||||||||| |||||| | |  || | ||||||  ||||||||||||||||||||| |    
T  1756758 gcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatatt 1756857  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    || |||||||||||  ||  | | || ||||||| |||||| |||||||| |||||    
T  1756858 gggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttgg 1756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 210 - 409
Target Start/End: Original strand, 1755967 - 1756166
Alignment:
Q  210 gaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattctt 309  Q
    |||||||  |||| || |||||||||   ||| ||||||||||||||| |  | |||||||||||||  ||||  |||||||||||   |||||||||||    
T  1755967 gaagtaaagtttaagatttcatcctccttgcatggaattgtgagaccaacagttggatgatcatatctgaattgctcttctgcttggcatagtaattctt 1756066  T
Q  310 gaaataatggttggttcaagtatgataatggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttcaagtccctt 409  Q
    ||||| | ||||| ||||||||||||| || |||||| | | |  |||||| |||  ||||||| ||||| || ||||||||   |||||||| ||||||    
T  1756067 gaaattaaggttgattcaagtatgatattgaaatcactatctgcttcattcgatcttcaacatagactgcaaggtagcctttctagacttcaaatccctt 1756166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 394
Target Start/End: Original strand, 1754243 - 1754397
Alignment:
Q  240 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatg 339  Q
    |||||||| |||||||||||||| |||||||||||| |||| | ||| || | ||  ||||| |||| ||||||| | | |||||||||||||||||  |    
T  1754243 caaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttagcaatttttgaaatgacgattggttcaagtatgatacgg 1754342  T
Q  340 gaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    | |||||||||||  |||||   || |||||||| || || ||||| ||||||||    
T  1754343 ggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttgg 1754397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 55084925 - 55084770
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||| || ||  || | |  || ||||||||| |||||||||||||||| || |      
T  55084925 gcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagtcttgaaatgatggttggttcaagtaagacata 55084826  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    || |||||||||||  ||||| | || |||||||||||||| ||| | ||||||||    
T  55084825 gggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttgg 55084770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 38032417 - 38032260
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 342  Q
    |||||||| ||||| ||||| ||||||  ||| || ||||| ||||| | |||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  38032417 ggaattgtaagaccgcccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcattcaagaatgatactggaa 38032318  T
Q  343 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    ||| ||||| ||||||| | || |||||||||||||| |||||||||||||| |||||    
T  38032317 tcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc 38032260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 38035190 - 38035033
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 342  Q
    |||||||||||||||||||| ||||||  ||| || ||||| ||||| |||||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  38035190 ggaattgtgagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaa 38035091  T
Q  343 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    |||  |||| || |||| | || ||||||||||| || |||| |||||||||||||||    
T  38035090 tcatgaaccttcgcattttctctccaacatacaccgcaagatggccttttgggacttc 38035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 38038682 - 38038525
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 342  Q
    |||||||| ||||| ||||| ||||||  ||| || ||||| ||||| |||||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  38038682 ggaattgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaa 38038583  T
Q  343 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    |||  |||| ||||||| | || |||||||||||||| |||| |||||||||||||||    
T  38038582 tcatgaaccttctcattttctctccaacatacactgcaagatggccttttgggacttc 38038525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 50913631 - 50913474
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 342  Q
    |||||||| ||||||||||| ||||||   || |||||||| ||||| |||||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  50913631 ggaattgtaagaccacccattggatgacagtagccaaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaa 50913532  T
Q  343 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    |||  ||||   ||||| | || |||||||||||||| ||||||||||||||||||||    
T  50913531 tcaagaacctcttcattttctctccaacatacactgcaagatagccttttgggacttc 50913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 38027590 - 38027433
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 342  Q
    |||||||| ||||||||||| ||||||  ||| || ||||| ||||| | |||  | || |||||||||||||| || |  |||||| ||||||  ||||    
T  38027590 ggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcattcaagaatgatacgggaa 38027491  T
Q  343 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    ||| ||||| ||||||| | || |||||||||||||| |||| ||||||||| |||||    
T  38027490 tcataaaccttctcattttctctccaacatacactgcaagatggccttttggaacttc 38027433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 352
Target Start/End: Complemental strand, 38044042 - 38043929
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| | || || ||||||||  | | ||| ||||||||||| |      
T  38044042 gcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacata 38043943  T
Q  339 ggaatcacaaaccg 352  Q
    || |||||||||||    
T  38043942 gggatcacaaaccg 38043929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 38024876 - 38025031
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||| | | ||| | ||||||  | | ||||||||||||||| |      
T  38024876 gcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagtatgacatg 38024975  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    || || ||||||||  |||||   || |||||||| ||||| |||||||| |||||    
T  38024976 gggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttgg 38025031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 38031328 - 38031483
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||| | | ||| | ||||||  | | ||||||||||||||| |      
T  38031328 gcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagtatgacatg 38031427  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    || || ||||||||  |||||   || |||||||| ||||| |||||||| |||||    
T  38031428 gggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttgg 38031483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 50910099 - 50910004
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 334  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| ||  ||||||| |  || | ||||||| | | |||||||||||||||    
T  50910099 gcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctccacttgattcaacaagttttgaaatgaagcttggttcaagtatga 50910004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 50911870 - 50912025
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    |||||||||||| || |||||||| || |||||||||||||||||||| ||||||||| | |  || | ||||||| | | |||||||||||||||        
T  50911870 gcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagcttggttcaagtatgacttg 50911969  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    || |||||||||||| ||||  | || |||||||| || || |||||||| |||||    
T  50911970 gggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 50912025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 48840713 - 48840759
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattctt 285  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  48840713 gcaaggaattgtgaggccacccattggatgatcatatccaaattctt 48840759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 38028767 - 38028824
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttga 296  Q
    ||||||||||||||| || ||||| ||||| ||||||||||||||||| || ||||||    
T  38028767 gcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttga 38028824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 239 - 331
Target Start/End: Original strand, 50904793 - 50904885
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagta 331  Q
    ||||||||| ||||| |||||||| |||||||||||||| ||||| || |||||| || | |  || ||||||||| | | ||||||||||||    
T  50904793 gcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagtcttgaaatgaagtttggttcaagta 50904885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 38036794 - 38036949
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 338  Q
    ||||||||||||||| || ||||| ||||| |||||||| |||||||| || |||||| | |  || | ||||||| | | ||||||||||||||  |      
T  38036794 gcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaattttgaaatgaagcttggttcaagtatggcatg 38036893  T
Q  339 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 394  Q
    || |  ||||||||| |||||   || ||||| |||||||| |||||||| |||||    
T  38036894 gggacaacaaaccgtttcatttgctctccaacgtacactgcaagatagccctttgg 38036949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 38040082 - 38040139
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttga 296  Q
    ||||||||||||||| || ||||| ||||| |||||||| |||||||| || ||||||    
T  38040082 gcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttga 38040139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 21608392 - 21608235
Alignment:
Q  243 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 342  Q
    |||||||| ||||| ||||| ||||||  ||| || ||||| ||||| |||||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  21608392 ggaattgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaa 21608293  T
Q  343 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 400  Q
    |||  |||| ||||||| | || |||||||||||||| |||||||||||||| |||||    
T  21608292 tcatgaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc 21608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 21634682 - 21634608
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaa 313  Q
    ||||||||||||||  || |||||  |||||||||||||||||||||| ||||||||| | || || ||||||||    
T  21634682 gcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaa 21634608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 21607297 - 21607354
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttga 296  Q
    ||||||||  ||||| |||||||| || |||||||||||||||||||| |||||||||    
T  21607297 gcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttga 21607354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 3073708 - 3073613
Alignment:
Q  239 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 334  Q
    ||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||  || | || || | ||||||| | | |||||||||||||||    
T  3073708 gcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaagtatga 3073613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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