View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_low_1 (Length: 789)

Name: NF19658_low_1
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_low_1
NF19658_low_1
[»] chr8 (6 HSPs)
chr8 (19-498)||(27816395-27816876)
chr8 (565-756)||(27816943-27817134)
chr8 (185-490)||(27814666-27814970)
chr8 (97-186)||(27814466-27814555)
chr8 (630-756)||(27815321-27815451)
chr8 (205-275)||(27817717-27817787)
[»] chr2 (1 HSPs)
chr2 (185-293)||(21625617-21625725)
[»] chr6 (2 HSPs)
chr6 (344-417)||(3634430-3634504)
chr6 (390-453)||(22259193-22259256)
[»] chr5 (2 HSPs)
chr5 (97-169)||(38710920-38710992)
chr5 (312-393)||(21166044-21166124)
[»] chr4 (1 HSPs)
chr4 (363-447)||(24476401-24476485)
[»] chr3 (1 HSPs)
chr3 (361-453)||(17132789-17132881)
[»] chr1 (1 HSPs)
chr1 (374-453)||(11821918-11821996)


Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Original strand, 27816395 - 27816876
Alignment:
Q  19 aactaattcattcaatcaataatacactttcatcttttctattcatttttcatctttctgagtttcttattagtttgcgtgtctttgcaggtacaccacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27816395 aactaattcattcaatcaataatacactttcatcttttctattcatttttcatctttctgagtttcttattagtttgcgtgtctttgcaggtacaccacc 27816494  T
Q  119 tcacactagtgaggaacgttcaacaaacatcatcgacaattgtaattgcattgtaatatctgctctgatgaagaagctttcacgaggaaggatgtttcgt 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27816495 tcacgctagtgaggaacgttcaacaaacatcatcgacaattgtaattgcattgtaatacctgctctgatgaagaagctttcacgaggaaggatgtttcgt 27816594  T
Q  219 tgaagacta--gatttcgacaggtttagttaagtttcaaatgaagtgtaacttcttcttaaagagacagattcagaaggtacaaacacgtagcaagcatg 316  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27816595 tgaagactatagatttcgagaggtttagttaagtttcaaatgaagtgtaacttcttcttaaagagacagattcagaaggtacaaacacgtagcaagcatg 27816694  T
Q  317 ttaaagcaatcgaagagaattaatttatagccgttagtttgagtagttattttctcttatgtttatataatagttttcataggaaaaaggggtcacaaat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27816695 ttaaagcaatcgaagagaattaatttatagccgttagtttgagtagttattttctcttatgtttatataatagttttcataggaaaaaggggtcacaaat 27816794  T
Q  417 cttatttatagaactcaaacattcaaagtaccagcgtacataaacaatagtcagaatatacgtaaagatttgctaagccatc 498  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  27816795 cttatttatagaactcaaacattcaaagtaccagcgtacagaaacaatagtcagaatatacgtaaagatttgctaaaccatc 27816876  T

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Target: chr8; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 565 - 756
Target Start/End: Original strand, 27816943 - 27817134
Alignment:
Q  565 cttgcattacttcactaatttctatcgaataaccttttgtcttcatatagtagttttaggttttatatataaaggcttgataatataattttcttatttt 664  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27816943 cttgcattacttcactaatttctatcgaataaccttttgtcttcatatagtagttttaggttttatatataaaggcttgatactataattttcttatttt 27817042  T
Q  665 tcatttatgtgtgcatctcagatacaatgaattgaagtgtattatcttatgttaattagcttatgtttataactctttttctaaaaaataac 756  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27817043 tcatttatgtgtgcatctcagatacaatgaattgaagtgtattatcttatgttaattagcttatgtttataactatttttctaaaaaataac 27817134  T

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Target: chr8; HSP #3
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 185 - 490
Target Start/End: Original strand, 27814666 - 27814970
Alignment:
Q  185 gatgaagaagctttcacgaggaaggatgtttcgttgaagactagatttcgacaggtttagttaagtttcaaatgaagtgtaacttcttcttaaagagaca 284  Q
    |||||||||||||||   | |||||||||||||| ||||||||| |||||| |||| |||||||||||||||| | ||||||||||||||||||||||||    
T  27814666 gatgaagaagctttcggcacgaaggatgtttcgtcgaagactagttttcgataggtatagttaagtttcaaataacgtgtaacttcttcttaaagagaca 27814765  T
Q  285 gattcagaaggtacaaacacgtagcaagcatgttaaagcaatcgaagagaattaatttatagccgttagtttgagtagttattttctcttatgtttatat 384  Q
    |||| |||||||||| || |||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||    
T  27814766 gatttagaaggtacagacgcgtagcaagcgtgttaaagctatcgaagagaagtaatttatagccgttggtttgagtagttattttctcttatgtatatat 27814865  T
Q  385 aatagtttt-cataggaaaaaggggtcacaaatcttatttatagaactcaaacattcaaagtaccagcgtacataaacaatagtcagaatatacgtaaag 483  Q
    | ||||||| |||||||||||||||||| |||||| ||||| |||   |||||| ||||||||||||||  ||   |||||||||||||| || || |||    
T  27814866 agtagttttccataggaaaaaggggtcataaatctcatttacagattccaaacactcaaagtaccagcg--cagtgacaatagtcagaatgtatgttaag 27814963  T
Q  484 atttgct 490  Q
    |||||||    
T  27814964 atttgct 27814970  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 27814466 - 27814555
Alignment:
Q  97 gtgtctttgcaggtacaccacctcacactagtgaggaacgttcaacaaacatcatcgacaattgtaattgcattgtaatatctgctctga 186  Q
    ||||||||||| |||||||| | ||| |||||||||||||||||||||||||||| | |||||||  |||||| |||||| |||||||||    
T  27814466 gtgtctttgcatgtacaccagcccacgctagtgaggaacgttcaacaaacatcattgtcaattgtggttgcatcgtaatacctgctctga 27814555  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 630 - 756
Target Start/End: Original strand, 27815321 - 27815451
Alignment:
Q  630 tatataaaggcttgataatataattttcttatttttcatttatgtgtgcatctcagatacaatgaattgaagtgtattatct-----tatgttaattagc 724  Q
    |||||| |||||||||| ||| |||  ||||||||||||||||||| |||||||| |||| ||||| ||  ||  || || |     |||||||||||      
T  27815321 tatatagaggcttgatactatgattagcttatttttcatttatgtgagcatctcacatactatgaagtgt-gttaataatgtagagatatgttaattatt 27815419  T
Q  725 ttatgtttataactctttttctaaaaaataac 756  Q
    ||||||||||||||||||||||||||||||||    
T  27815420 ttatgtttataactctttttctaaaaaataac 27815451  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 27817717 - 27817787
Alignment:
Q  205 gaaggatgtttcgttgaagactagatttcgacaggtttagttaagtttcaaatgaagtgtaacttcttctt 275  Q
    |||| ||||||| | ||||| | | ||||||||||||||||||||||||||||  ||||||||||||||||    
T  27817717 gaagcatgtttcatcgaagattggttttcgacaggtttagttaagtttcaaatatagtgtaacttcttctt 27817787  T

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Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 21625725 - 21625617
Alignment:
Q  185 gatgaagaagctttcacgaggaaggatgtttcgttgaagactagatttcgacaggtttagttaagtttcaaatgaagtgtaacttcttcttaaagagaca 284  Q
    ||||||||||||||||  | |||||||||||||  ||||| | | ||||||||| |||||||||||||||||| |||||||| ||| | |||||||||||    
T  21625725 gatgaagaagctttcaacatgaaggatgtttcgacgaagatttggtttcgacagatttagttaagtttcaaataaagtgtaatttccttttaaagagaca 21625626  T
Q  285 gattcagaa 293  Q
    | |||||||    
T  21625625 ggttcagaa 21625617  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 417
Target Start/End: Complemental strand, 3634504 - 3634430
Alignment:
Q  344 tagccgttagtttgagtagttattttctcttatgtttatataatag-ttttcataggaaaaaggggtcacaaatc 417  Q
    |||||||| || ||| ||||||||||||||||||  |||||| ||| ||||||||||||||| ||||||||||||    
T  3634504 tagccgttggtatgattagttattttctcttatgcatatatagtagtttttcataggaaaaacgggtcacaaatc 3634430  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 22259193 - 22259256
Alignment:
Q  390 ttttcataggaaaaaggggtcacaaatcttatttatagaactcaaacattcaaagtaccagcgt 453  Q
    |||||||| |||||| || |||||||||| | ||| |||| ||||||| |||||||||||||||    
T  22259193 ttttcatatgaaaaatggatcacaaatctcagttacagaattcaaacactcaaagtaccagcgt 22259256  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 38710920 - 38710992
Alignment:
Q  97 gtgtctttgcaggtacaccacctcacactagtgaggaacgttcaacaaacatcatcgacaattgtaattgcat 169  Q
    ||||||||||| |||||||| | ||| ||||||| |||||||||||||||  | |||||||||||| ||||||    
T  38710920 gtgtctttgcaagtacaccatcccacgctagtgaagaacgttcaacaaacgccttcgacaattgtagttgcat 38710992  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 21166044 - 21166124
Alignment:
Q  312 gcatgttaaagcaatcgaagagaattaatttatagccgttagtttgagtagttattttctcttatgtttatataatagtttt 393  Q
    ||||||||||||  ||||| |||  || ||| ||||||||||| ||  ||||||||||||||||||| |||||| |||||||    
T  21166044 gcatgttaaagctgtcgaaaagatgtagtttttagccgttagtctgt-tagttattttctcttatgtatatatagtagtttt 21166124  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 447
Target Start/End: Complemental strand, 24476485 - 24476401
Alignment:
Q  363 ttattttctcttatgtttatataatagt-tttcataggaaaaaggggtcacaaatcttatttatagaactcaaacattcaaagtac 447  Q
    ||||||||||| |||| |||||| |||| |||||||||||||  || |||||||||| ||||| |||| ||||||| |||||||||    
T  24476485 ttattttctct-atgtatatatagtagtgtttcataggaaaagcggatcacaaatctcatttacagaattcaaacactcaaagtac 24476401  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 453
Target Start/End: Complemental strand, 17132881 - 17132789
Alignment:
Q  361 agttattttctcttatgtttatataatagtttt-cataggaaaaaggggtcacaaatcttatttatagaactcaaacattcaaagtaccagcgt 453  Q
    ||||||||||||| |||| |||||| ||||||| ||||||||||| || ||||||||| |  |||||||| || | || | |||||||||||||    
T  17132881 agttattttctct-atgtatatatagtagtttttcataggaaaaacggttcacaaatcattattatagaattctagcactgaaagtaccagcgt 17132789  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 453
Target Start/End: Complemental strand, 11821996 - 11821918
Alignment:
Q  374 tatgtttatataatagttttc-ataggaaaaaggggtcacaaatcttatttatagaactcaaacattcaaagtaccagcgt 453  Q
    ||||| || |||||||||||  |||||||||| |||||||||||  ||||||||||| || | ||||| ||||||||||||    
T  11821996 tatgtataaataatagttttttataggaaaaacgggtcacaaat--tatttatagaattctagcattcgaagtaccagcgt 11821918  T

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