View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_low_102 (Length: 238)

Name: NF19658_low_102
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_low_102
NF19658_low_102
[»] chr5 (3 HSPs)
chr5 (1-228)||(1754727-1754954)
chr5 (82-228)||(1756712-1756858)
chr5 (120-184)||(1759335-1759399)
[»] chr4 (48 HSPs)
chr4 (1-228)||(27412703-27412935)
chr4 (1-226)||(27415662-27415896)
chr4 (82-225)||(27475534-27475677)
chr4 (82-225)||(27503964-27504107)
chr4 (38-225)||(27420450-27420640)
chr4 (74-223)||(27497269-27497418)
chr4 (99-225)||(27524566-27524692)
chr4 (113-225)||(27514933-27515045)
chr4 (100-225)||(27585730-27585855)
chr4 (49-228)||(27425851-27426031)
chr4 (98-225)||(27468298-27468425)
chr4 (82-225)||(27563301-27563444)
chr4 (82-223)||(27508896-27509037)
chr4 (44-223)||(27490004-27490184)
chr4 (82-228)||(27478838-27478984)
chr4 (98-226)||(27423263-27423391)
chr4 (82-226)||(27565906-27566050)
chr4 (114-225)||(27570036-27570147)
chr4 (117-223)||(17970343-17970449)
chr4 (78-228)||(27506737-27506887)
chr4 (121-228)||(27485937-27486044)
chr4 (120-225)||(27479943-27480048)
chr4 (147-228)||(27527200-27527281)
chr4 (98-228)||(27431119-27431249)
chr4 (128-226)||(27498456-27498554)
chr4 (120-225)||(27487025-27487130)
chr4 (119-228)||(27495575-27495684)
chr4 (117-228)||(27557528-27557639)
chr4 (127-225)||(27411456-27411554)
chr4 (120-193)||(27526105-27526178)
chr4 (118-175)||(27559231-27559288)
chr4 (120-228)||(27444787-27444895)
chr4 (120-228)||(27501356-27501464)
chr4 (144-228)||(27502824-27502908)
chr4 (120-228)||(27513769-27513877)
chr4 (120-179)||(27460566-27460625)
chr4 (120-211)||(27554365-27554456)
chr4 (118-225)||(27567297-27567404)
chr4 (120-193)||(27502128-27502201)
chr4 (120-193)||(27505695-27505768)
chr4 (133-225)||(27424520-27424612)
chr4 (120-179)||(27466909-27466968)
chr4 (128-179)||(27473980-27474031)
chr4 (128-175)||(27571715-27571762)
chr4 (120-189)||(27500331-27500400)
chr4 (120-193)||(27516602-27516675)
chr4 (5-42)||(27565820-27565857)
chr4 (120-192)||(27469535-27469607)
[»] chr3 (12 HSPs)
chr3 (113-223)||(50910004-50910114)
chr3 (117-220)||(55084833-55084936)
chr3 (121-223)||(38043947-38044049)
chr3 (120-223)||(38024868-38024971)
chr3 (120-223)||(38031320-38031423)
chr3 (121-223)||(50911863-50911965)
chr3 (78-223)||(38028717-38028862)
chr3 (78-223)||(38040032-38040177)
chr3 (117-222)||(48840702-48840806)
chr3 (120-220)||(50904785-50904885)
chr3 (78-223)||(38033726-38033875)
chr3 (122-222)||(38036788-38036888)
[»] chr2 (1 HSPs)
chr2 (117-223)||(3073613-3073719)
[»] chr8 (3 HSPs)
chr8 (78-223)||(21607247-21607392)
chr8 (78-223)||(21604705-21604850)
chr8 (117-205)||(21634605-21634693)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 1754954 - 1754727
Alignment:
Q  1 ttcccatctttacaatttgataagatacctagtttccaaaaatgtctcctaaactatgtcactctcttttgtatgaaatttatagcccatttaagctaga 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1754954 ttcccatctttacaatttgataagatacctagtttacaaaaatgtctcctaaactatgtcactctcttttgtatgaaatttatagcccatttaagctaga 1754855  T
Q  101 agttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1754854 agttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagcttgactcaacaaggattga 1754755  T
Q  201 aacgatggttgattcaagtatgatattg 228  Q
    ||||||||||||||||||||||||||||    
T  1754754 aacgatggttgattcaagtatgatattg 1754727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 1756712 - 1756858
Alignment:
Q  82 atagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagc 181  Q
    |||||||||| |||| ||| || |||| || |||| ||||||| |||||| ||||||||||||||||||| || |||||||||||||| ||||| |||||    
T  1756712 atagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagc 1756811  T
Q  182 ttgactcaacaaggattgaaacgatggttgattcaagtatgatattg 228  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  1756812 ttgactcaacaagtattgaaacgatggttggttcaagtatgatattg 1756858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 1759399 - 1759335
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttg 184  Q
    |||||| |||||||||||||||| |||||||||||||| |  ||| |||| | ||||||||||||    
T  1759399 tcttctctgcaaagaatggtgagaccacccattggatggttgtattcaaattgttcctcagcttg 1759335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27412935 - 27412703
Alignment:
Q  1 ttcccatctttacaatttgataagatacctagtttccaaaaa--tgtctc--ctaaactatgtcactctcttttg-tatgaaatttatagcccatttaag 95  Q
    |||||||||||||||||| || |||| |||||||| ||||||  ||||||  ||||||||||||| | ||||||| | | | ||| ||||||||||  ||    
T  27412935 ttcccatctttacaatttcattagatgcctagtttacaaaaaaatgtctctactaaactatgtcagtttcttttggtgtcagattcatagcccattcgag 27412836  T
Q  96 ctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaagg 195  Q
    | ||| ||||||| ||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||     
T  27412835 cgagatgttatatgttgaaagacatcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagt 27412736  T
Q  196 attgaaacgatggttgattcaagtatgatattg 228  Q
     ||||||  ||||||| ||||||||||||||||    
T  27412735 cttgaaataatggttggttcaagtatgatattg 27412703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27415896 - 27415662
Alignment:
Q  1 ttcccatctttacaatttgataagatacctagtttccaaaaatgtctc-------ctaaactatgtcactctcttttgtatg--aaatttatagcccatt 91  Q
    ||||||||||||||||||||||| |  |||||||| ||||||||||||       ||||||||||||| |||||||| | ||  | ||| |||  || ||    
T  27415896 ttcccatctttacaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtgttagattcatattccgtt 27415797  T
Q  92 taagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaac 191  Q
     |||| ||| ||||| | ||  |||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  27415796 caagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaac 27415697  T
Q  192 aaggattgaaacgatggttgattcaagtatgatat 226  Q
    |||  ||||||||||||||| ||||||||||||||    
T  27415696 aagtcttgaaacgatggttggttcaagtatgatat 27415662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 27475534 - 27475677
Alignment:
Q  82 atagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagc 181  Q
    |||||||||| |||| ||||||||||| || |||||||||||| | |||| ||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  27475534 atagcccattcaagcaagaagttatatgttggaagacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggc 27475633  T
Q  182 ttgactcaacaaggattgaaacgatggttgattcaagtatgata 225  Q
    |||||||||||||  |||||| || |||||||||||||||||||    
T  27475634 ttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 27504107 - 27503964
Alignment:
Q  82 atagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagc 181  Q
    |||| ||||| |||| ||||||||| | || |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27504107 atagtccattcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggc 27504008  T
Q  182 ttgactcaacaaggattgaaacgatggttgattcaagtatgata 225  Q
    |||||||||||||  |||||| || ||||| |||||||||||||    
T  27504007 ttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 27420640 - 27420450
Alignment:
Q  38 aaaaatgtctc--ctaaactatgtcactctcttttg-tatgaaatttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaaga 134  Q
    |||||||||||  |||||||||||||  |||||||| | | | ||| |||||||||| |||| ||||||||||| ||  ||||||||||| |||||| ||    
T  27420640 aaaaatgtctctactaaactatgtcagactcttttggtctcagattcatagcccattgaagcaagaagttatatgttgaaagacatcttccgtgcaagga 27420541  T
Q  135 atggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatgata 225  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||  |||||| || |||||  ||||||||||||    
T  27420540 atggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagccttgaaatgaaggttggctcaagtatgata 27420450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 27497269 - 27497418
Alignment:
Q  74 tgaaatttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactct 173  Q
    |||||||||||||||||| |||| |||||||||   || |||||||| ||| |||||| ||||||||||||||||  | |||||||||||||||||||||    
T  27497269 tgaaatttatagcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatggtgaggccacctgtgggatgatcatatccaaactct 27497368  T
Q  174 tcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatga 223  Q
    ||||||||||||||||||||  |||||||| ||||||| || ||||||||    
T  27497369 tcctcagcttgactcaacaaatattgaaacaatggttggtttaagtatga 27497418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 99 - 225
Target Start/End: Complemental strand, 27524692 - 27524566
Alignment:
Q  99 gaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggatt 198  Q
    |||||||||| || |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||    
T  27524692 gaagttatatgttggaagacatcttcggtgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtctt 27524593  T
Q  199 gaaacgatggttgattcaagtatgata 225  Q
    |||| || ||||| ||||| |||||||    
T  27524592 gaaatgaaggttggttcaaatatgata 27524566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 27515045 - 27514933
Alignment:
Q  113 gaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttga 212  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||||  |||||| || ||||||    
T  27515045 gaagacatcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttga 27514946  T
Q  213 ttcaagtatgata 225  Q
    |||||||||||||    
T  27514945 ttcaagtatgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 27585855 - 27585730
Alignment:
Q  100 aagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattg 199  Q
    ||||||||| || |||| |||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| || |||||||||| |||   |||    
T  27585855 aagttatatgtttgaaggcatcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttg 27585756  T
Q  200 aaacgatggttgattcaagtatgata 225  Q
    |||| ||||||| |||||||||||||    
T  27585755 aaacaatggttggttcaagtatgata 27585730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 228
Target Start/End: Complemental strand, 27426031 - 27425851
Alignment:
Q  49 ctaaactatgtcactctcttttg-tatgaaatttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccac 147  Q
    ||||||||||||| ||| ||||| | | | ||| |||| ||||| |||| ||| || |||| ||  || ||||| || |||||| |||||||||||||||    
T  27426031 ctaaactatgtcagtctgttttggtgtcagattcataggccattcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgaggccac 27425932  T
Q  148 ccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatgatattg 228  Q
    |||| |||||||||||||||||||||||||||  ||||||||| |||  |||||| |||||||| ||||||||||||||||    
T  27425931 ccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatggttggttcaagtatgatattg 27425851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 27468298 - 27468425
Alignment:
Q  98 agaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggat 197  Q
    |||| |||||| || |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||||  |    
T  27468298 agaaattatatgttggaagacatcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtct 27468397  T
Q  198 tgaaacgatggttgattcaagtatgata 225  Q
    ||||| || ||||| || ||||||||||    
T  27468398 tgaaatgaaggttggtttaagtatgata 27468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 27563301 - 27563444
Alignment:
Q  82 atagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagc 181  Q
    ||||| |||| |||| ||||||||||| ||  ||| ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| || ||    
T  27563301 atagctcattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggc 27563400  T
Q  182 ttgactcaacaaggattgaaacgatggttgattcaagtatgata 225  Q
    |||||||| |||   ||||||| ||| ||| |||||||||||||    
T  27563401 ttgactcagcaaatcttgaaacaatgtttggttcaagtatgata 27563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 27509037 - 27508896
Alignment:
Q  82 atagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagc 181  Q
    |||| ||||| |||| ||||||||||| || ||| |||||||| | |||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27509037 atagtccattgaagcaagaagttatatgttggaacacatcttcggagcatggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagc 27508938  T
Q  182 ttgactcaacaaggattgaaacgatggttgattcaagtatga 223  Q
     ||| ||||||||  |||||| || ||||| ||||| |||||    
T  27508937 ctgattcaacaagtcttgaaatgaaggttggttcaaatatga 27508896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 27490184 - 27490004
Alignment:
Q  44 gtctcctaaactatgtcactctctttt-gtatgaaatttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgag 142  Q
    |||| ||||||||||||| ||||||   ||||||| |||| |||||||| |||| |||| |||| | || |||| |||||||  ||  | ||||||||||    
T  27490184 gtctactaaactatgtcagtctcttgcagtatgaagtttacagcccattaaagcgagaaattatgtattggaagtcatcttcgttgacaggaatggtgag 27490085  T
Q  143 gccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatga 223  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||   |||||| |||||||  || ||||||||    
T  27490084 gccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaatgatggtttgtttaagtatga 27490004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 27478838 - 27478984
Alignment:
Q  82 atagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagc 181  Q
    |||||||||| |||| ||||||||||| || ||| |||||||| | |||| ||||||||||||||||||| ||||||||||||||||| ||||| || ||    
T  27478838 atagcccattcaagcaagaagttatatgttggaacacatcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgc 27478937  T
Q  182 ttgactcaacaaggattgaaacgatggttgattcaagtatgatattg 228  Q
    ||||   | |||   ||||||| ||||||| ||||||||||||||||    
T  27478938 ttgatgtagcaattcttgaaacaatggttggttcaagtatgatattg 27478984  T

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Target: chr4; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 27423391 - 27423263
Alignment:
Q  98 agaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggat 197  Q
    ||||||||||| || ||| |||||||| |||||| ||| ||||||||||||||| |||||||  || |||||||||||||| ||||||||||||||   |    
T  27423391 agaagttatatgttggaaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattct 27423292  T
Q  198 tgaaacgatggttgattcaagtatgatat 226  Q
    ||||| || ||||| ||||||||||||||    
T  27423291 tgaaatgaaggttggttcaagtatgatat 27423263  T

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Target: chr4; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 27565906 - 27566050
Alignment:
Q  82 atagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagc 181  Q
    |||| ||||| |||| ||||||||||| || ||||||||||||    ||| |||||||||||||||||||||||||||||||||||  |||||||||| |    
T  27565906 atagtccattcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggccacccattggatgatcatatccatgctcttcctcaac 27566005  T
Q  182 ttgactcaacaaggattgaaacgatggttgattcaagtatgatat 226  Q
    |||  ||| ||||  ||||||| ||||||| |||| |||||||||    
T  27566006 ttgtatcagcaagtcttgaaacaatggttggttcaggtatgatat 27566050  T

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Target: chr4; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 27570036 - 27570147
Alignment:
Q  114 aagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgat 213  Q
    |||| |||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||  |||||| || |||||      
T  27570036 aagatatcttcggtgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaatgaaggttggc 27570135  T
Q  214 tcaagtatgata 225  Q
    | ||||||||||    
T  27570136 ttaagtatgata 27570147  T

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Target: chr4; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 17970449 - 17970343
Alignment:
Q  117 acatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattca 216  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||||| || |||||||| ||  |||||| |||| ||||||| || | ||| ||||    
T  17970449 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttca 17970350  T
Q  217 agtatga 223  Q
    |||||||    
T  17970349 agtatga 17970343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 27506887 - 27506737
Alignment:
Q  78 atttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcct 177  Q
    |||||| || |||| |||| ||||||||| | ||  ||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||| ||||| |    
T  27506887 atttatggctcattcaagcaagaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttctt 27506788  T
Q  178 cagcttgactcaacaaggattgaaacgatggttgattcaagtatgatattg 228  Q
    | ||||||   | |||   ||||||| ||||||| || |||||||||||||    
T  27506787 ccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatattg 27506737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 27485937 - 27486044
Alignment:
Q  121 cttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagta 220  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||||||| ||||| || ||||||   | |||   ||||||| ||||||| ||||||||    
T  27485937 cttcagtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagta 27486036  T
Q  221 tgatattg 228  Q
    ||||||||    
T  27486037 tgatattg 27486044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 27480048 - 27479943
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagt 219  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||| |||| | ||||||||||||  |||||||   ||| || |||| ||| |||||||    
T  27480048 tcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgtttggttcaagt 27479949  T
Q  220 atgata 225  Q
    ||||||    
T  27479948 atgata 27479943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 27527281 - 27527200
Alignment:
Q  147 cccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatgatattg 228  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||   | ||||||||||||| || |||| ||||||||    
T  27527281 cccatgggatgatcatatccaaactcttcctcagcttgactcagcaactctagaaacgatggttggtttaagtgtgatattg 27527200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 27431119 - 27431249
Alignment:
Q  98 agaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggat 197  Q
    |||||| ||||||  ||| || |||||| ||||| |||| ||||| |||||  ||||||| ||||||||||| | |||||| |||||| |||||||   |    
T  27431119 agaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattcaacaattct 27431218  T
Q  198 tgaaacgatggttgattcaagtatgatattg 228  Q
    ||||| || ||||| ||||||||||||||||    
T  27431219 tgaaatgacggttggttcaagtatgatattg 27431249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 27498554 - 27498456
Alignment:
Q  128 gcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatgatat 226  Q
    |||| |||| ||||| ||||||||||||||||||||| | || | |||||| |||||  ||||||||  ||| ||||||||||| ||||||||||||||    
T  27498554 gcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtcttggaacgatggttggttcaagtatgatat 27498456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 27487130 - 27487025
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagt 219  Q
    |||||| ||||| |||| || || ||||||||||||||||||||| |||| | ||| ||||||||  |||||||   ||||||||||||||| || ||||    
T  27487130 tcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggttggtttaagt 27487031  T
Q  220 atgata 225  Q
    ||||||    
T  27487030 atgata 27487025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 27495684 - 27495575
Alignment:
Q  119 atcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaag 218  Q
    ||||||| ||||| |||||||||| |||||||||||||||| | ||||||||||||| ||||||| ||  | |||   |||||| |  ||||||| ||||    
T  27495684 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaag 27495585  T
Q  219 tatgatattg 228  Q
    ||||||||||    
T  27495584 tatgatattg 27495575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 27557639 - 27557528
Alignment:
Q  117 acatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattca 216  Q
    ||||||||| ||||  |||| ||||| ||||||||||||||| ||||| |||| | ||||||||||||| ||| |||   |||||| |||||||| || |    
T  27557639 acatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggttggttta 27557540  T
Q  217 agtatgatattg 228  Q
    ||||||| ||||    
T  27557539 agtatgacattg 27557528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 27411456 - 27411554
Alignment:
Q  127 tgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatgata 225  Q
    ||||| |||| ||||| |||||||| ||||||||||||||||| ||||| || |||||| | |  ||   ||||||||||||||| |||||||||||||    
T  27411456 tgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgata 27411554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 27526105 - 27526178
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaa 193  Q
    |||||| ||||| |||| ||||| |||||| |||||||||||||| |||| | |||||||||||| ||||||||    
T  27526105 tcttctctgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaa 27526178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 27559231 - 27559288
Alignment:
Q  118 catcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttc 175  Q
    |||||||  ||||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  27559231 catcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttc 27559288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 228
Target Start/End: Original strand, 27444787 - 27444895
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagt 219  Q
    |||||| ||||| |||| ||||| |||||||||||||| |||||||| || | |||||| |||||| |||| ||   |||||| |||| |||  ||||||    
T  27444787 tcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagt 27444886  T
Q  220 atgatattg 228  Q
    |||||||||    
T  27444887 atgatattg 27444895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 27501464 - 27501356
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagt 219  Q
    |||||| | ||| |||| ||||| |||||| |||||||||| ||| |||| | |||||| |||||  ||||||||  ||||||| ||||||| || ||||    
T  27501464 tcttctctacaaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttgaaacaatggttggtttaagt 27501365  T
Q  220 atgatattg 228  Q
    |||||||||    
T  27501364 atgatattg 27501356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 27502824 - 27502908
Alignment:
Q  144 ccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatgatattg 228  Q
    |||||||||||||| ||||||||||| |||||| ||||||| |||| ||||  |||||| || | ||||||||| ||||| ||||    
T  27502824 ccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattg 27502908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 228
Target Start/End: Original strand, 27513769 - 27513877
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagt 219  Q
    |||||| ||||| |||| ||||| ||||||||||||||||||||| || | | ||| ||||||||  |||||||   ||| ||||| | ||| |||||||    
T  27513769 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttcaacaattcttggaacgaggtttggttcaagt 27513868  T
Q  220 atgatattg 228  Q
    |||||||||    
T  27513869 atgatattg 27513877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 27460625 - 27460566
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctca 179  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||| |||| | |||||||    
T  27460625 tcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctca 27460566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 27554456 - 27554365
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttg 211  Q
    |||||| | ||| |||| ||||| | |||| ||||||||||||||||||| | ||||||||||||| ||| |||   |||||||||||||||    
T  27554456 tcttctctacaaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaacgatggttg 27554365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 27567404 - 27567297
Alignment:
Q  118 catcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaa 217  Q
    |||||||  ||||| |||| ||||| |||||||||||||||||||| ||||| ||||| || | |||| | |  ||   ||||||||||||||| |||||    
T  27567404 catcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaa 27567305  T
Q  218 gtatgata 225  Q
    ||||||||    
T  27567304 gtatgata 27567297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 27502128 - 27502201
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaa 193  Q
    |||||| ||||| |||| || || ||||||||||||||||||||| |||| | ||||||||||||  |||||||    
T  27502128 tcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaa 27502201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 27505695 - 27505768
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaa 193  Q
    |||||| ||||| |||| ||||| |||||||||||||| |||||| |||| | ||||||||||||  |||||||    
T  27505695 tcttctctgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaa 27505768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 27424520 - 27424612
Alignment:
Q  133 gaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatgata 225  Q
    ||||||| || |||||||||||||||||||||||| | ||||| |||| |||| | | |||   |||||| || ||||| |||||||||||||    
T  27424520 gaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgata 27424612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 27466968 - 27466909
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctca 179  Q
    |||||| ||||| |||| ||||| ||||||||||||||||||||| |||| | |||||||    
T  27466968 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctca 27466909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 27474031 - 27473980
Alignment:
Q  128 gcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctca 179  Q
    |||| |||||||||| ||||||||||||||||||||| |||| | |||||||    
T  27474031 gcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctca 27473980  T

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Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 27571762 - 27571715
Alignment:
Q  128 gcaaagaatggtgaggccacccattggatgatcatatccaaactcttc 175  Q
    |||| |||| ||||| |||||||||||||||||||||||||| |||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttc 27571715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 27500331 - 27500400
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactca 189  Q
    |||||| ||||| |||| |||| ||||||||||||||| |||||||| |||| ||| |||| ||| ||||    
T  27500331 tcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagattggctca 27500400  T

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Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 27516602 - 27516675
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaa 193  Q
    |||||| ||||| |||| ||||| || ||||||||||| |||||| |||| | ||||||||||||  |||||||    
T  27516602 tcttctttgcaaggaatagtgagaccccccattggatggtcatattcaaattgttcctcagcttggttcaacaa 27516675  T

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Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 27565820 - 27565857
Alignment:
Q  5 catctttacaatttgataagatacctagtttccaaaaa 42  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  27565820 catctttacaatttgataagatgcctagtttacaaaaa 27565857  T

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Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 27469607 - 27469535
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaaca 192  Q
    |||||| ||||| |||| || || |||||||||||||| |||||| |||| | ||| |||||||| |||||||    
T  27469607 tcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaaca 27469535  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 50910114 - 50910004
Alignment:
Q  113 gaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttga 212  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||  ||||| ||||||||  |||||| || | |||     
T  50910114 gaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctccacttgattcaacaagttttgaaatgaagcttgg 50910015  T
Q  213 ttcaagtatga 223  Q
    |||||||||||    
T  50910014 ttcaagtatga 50910004  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 55084936 - 55084833
Alignment:
Q  117 acatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattca 216  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||| ||  |||||||||||  |||||| |||||||| ||||    
T  55084936 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagtcttgaaatgatggttggttca 55084837  T
Q  217 agta 220  Q
    ||||    
T  55084836 agta 55084833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 38044049 - 38043947
Alignment:
Q  121 cttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagta 220  Q
    |||| |||||| |||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||| ||||  ||||||||| | ||||||||||||    
T  38044049 cttcggtgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagta 38043950  T
Q  221 tga 223  Q
    |||    
T  38043949 tga 38043947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 38024868 - 38024971
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagt 219  Q
    |||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||  |||||| || | ||| |||||||    
T  38024868 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagt 38024967  T
Q  220 atga 223  Q
    ||||    
T  38024968 atga 38024971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 38031320 - 38031423
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagt 219  Q
    |||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||  |||||| || | ||| |||||||    
T  38031320 tcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagt 38031419  T
Q  220 atga 223  Q
    ||||    
T  38031420 atga 38031423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 50911863 - 50911965
Alignment:
Q  121 cttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagta 220  Q
    ||||||||||| |||| || |||||||||||||| |||||||||||||| |||||||| |||||||||||||||  |||||| || | ||| ||||||||    
T  50911863 cttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagcttggttcaagta 50911962  T
Q  221 tga 223  Q
    |||    
T  50911963 tga 50911965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 38028717 - 38028862
Alignment:
Q  78 atttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcct 177  Q
    |||||||||||||| |||  |||||| ||||    ||| || |||||||||||| |||| |||||||| ||||||||||| ||||||||||| |||||||    
T  38028717 atttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcct 38028816  T
Q  178 cagcttgactcaacaaggattgaaacgatggttgattcaagtatga 223  Q
    | ||||||||||||| |  |||||| || | ||| |||||||||||    
T  38028817 cggcttgactcaacaggttttgaaatgaagcttggttcaagtatga 38028862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 38040032 - 38040177
Alignment:
Q  78 atttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcct 177  Q
    |||||||||||||| |||  |||||| ||||    ||| || |||||||||||| |||| |||||||| ||||||||||| |||||||| || |||||||    
T  38040032 atttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcct 38040131  T
Q  178 cagcttgactcaacaaggattgaaacgatggttgattcaagtatga 223  Q
    | ||||||||||||| |  |||||| || | ||| |||||||||||    
T  38040132 cggcttgactcaacaggttttgaaatgaagcttggttcaagtatga 38040177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 48840702 - 48840806
Alignment:
Q  117 acatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattca 216  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||| |||  ||| ||||||||||  |||||| || | ||| ||||    
T  48840702 acatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctttctccactt-actcaacaagtcttgaaatgaggcttggttca 48840800  T
Q  217 agtatg 222  Q
    ||||||    
T  48840801 agtatg 48840806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 50904785 - 50904885
Alignment:
Q  120 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagt 219  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||| || || ||||| ||| |||||||||||  |||||| || | ||| |||||||    
T  50904785 tcttctctgcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagtcttgaaatgaagtttggttcaagt 50904884  T
Q  220 a 220  Q
    |    
T  50904885 a 50904885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 38033726 - 38033875
Alignment:
Q  78 atttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccatt----ggatgatcatatccaaactct 173  Q
    |||||||||||||| |||| |||||| ||||    ||| ||||||||||||||  |||| |||| ||| ||||||    ||||| ||||||||||| |||    
T  38033726 atttatagcccattgaagcgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtgatgccgcccattaattggatggtcatatccaaattct 38033825  T
Q  174 tcctcagcttgactcaacaaggattgaaacgatggttgattcaagtatga 223  Q
    ||||| |||||||||||||||  |||||| || | ||| |||||||||||    
T  38033826 tcctcggcttgactcaacaagttttgaaatgaagcttggttcaagtatga 38033875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 38036788 - 38036888
Alignment:
Q  122 ttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattcaagtat 221  Q
    |||||||||| |||| |||||||| ||||||||||| |||||||| || |||||||| ||||||||||||||   |||||| || | ||| |||||||||    
T  38036788 ttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaattttgaaatgaagcttggttcaagtat 38036887  T
Q  222 g 222  Q
    |    
T  38036888 g 38036888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 3073719 - 3073613
Alignment:
Q  117 acatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacgatggttgattca 216  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||||| || |||||||| ||  |||||| |||| ||||||| || | ||| ||||    
T  3073719 acatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttca 3073620  T
Q  217 agtatga 223  Q
    |||||||    
T  3073619 agtatga 3073613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 21607247 - 21607392
Alignment:
Q  78 atttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcct 177  Q
    |||||||||||||| |||| |||||| || |    ||| | ||||||||||||| |||  ||||||||||||||||| |||||||||||||| |||||||    
T  21607247 atttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcct 21607346  T
Q  178 cagcttgactcaacaaggattgaaacgatggttgattcaagtatga 223  Q
    | ||||||||||| |||  |||||| || | | | |||||||||||    
T  21607347 ctgcttgactcaataagttttgaaaggaagctcggttcaagtatga 21607392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 21604705 - 21604850
Alignment:
Q  78 atttatagcccatttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcct 177  Q
    |||||||||||||| |||  |||||| ||||    ||| || |||||||||||| |||| |||||||| ||||||||||| |||||||| || |||||||    
T  21604705 atttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattcttcct 21604804  T
Q  178 cagcttgactcaacaaggattgaaacgatggttgattcaagtatga 223  Q
    |  |||||||||||| |  |||||| || | ||| |||||||||||    
T  21604805 cgtcttgactcaacatgttttgaaatgaagcttggttcaagtatga 21604850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 21634693 - 21634605
Alignment:
Q  117 acatcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgactcaacaaggattgaaacga 205  Q
    |||||||| |||||| |||| |||| ||| |||||| |||||||||||||||| |||||||| |||||||||| ||||  |||||||||    
T  21634693 acatcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacga 21634605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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