View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_107 (Length: 227)
Name: NF19658_low_107
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_107 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 30344228 - 30344009
Alignment:
| Q |
8 |
ttccctcgttttgaaccttagtctcgttgtaatttcttaaagataattagtctgactctacaatatttcaaaattgttcaaattaagaaatgtgtagtta |
107 |
Q |
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| T |
30344228 |
ttccctcgttttgaaccttagtctcgttgtaatttcttaaagaaaaaaagtctgactctacaatatttcaaaattgttcaaattaagaaatgtgtagtta |
30344129 |
T |
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| Q |
108 |
ctcaaaattacattcaaaatgcgtcgaaatggggtgggttatgaacaaatctaaattctacgtataatgatttacagttctaaaaatatgttcagataaa |
207 |
Q |
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| T |
30344128 |
ctcaaaattacattcaaaatgcgtcgaaatggggtgggttatgaacaaatctaaattctacgtataatgatttacggttctaaaaatatgttcaaataaa |
30344029 |
T |
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| Q |
208 |
taattccatcaagtcactct |
227 |
Q |
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|||||||||||||||||||| |
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| T |
30344028 |
taattccatcaagtcactct |
30344009 |
T |
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