View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_low_108 (Length: 219)

Name: NF19658_low_108
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_low_108
NF19658_low_108
[»] chr3 (27 HSPs)
chr3 (1-210)||(41985589-41985798)
chr3 (3-200)||(41980825-41981022)
chr3 (69-208)||(9494822-9494961)
chr3 (55-210)||(9407327-9407482)
chr3 (58-210)||(9425534-9425686)
chr3 (55-193)||(9343823-9343961)
chr3 (55-203)||(9329804-9329952)
chr3 (55-171)||(9448314-9448430)
chr3 (55-210)||(9617463-9617618)
chr3 (55-203)||(9336508-9336656)
chr3 (58-190)||(9655360-9655492)
chr3 (55-203)||(9695616-9695764)
chr3 (55-210)||(9397746-9397903)
chr3 (58-190)||(9646367-9646499)
chr3 (69-201)||(9352871-9353003)
chr3 (55-211)||(9432856-9433012)
chr3 (55-210)||(9416534-9416689)
chr3 (70-163)||(9340679-9340772)
chr3 (108-201)||(9377056-9377149)
chr3 (111-206)||(9614009-9614104)
chr3 (63-201)||(9626488-9626626)
chr3 (89-189)||(9441815-9441915)
chr3 (70-201)||(9347957-9348088)
chr3 (70-201)||(9369611-9369742)
chr3 (49-170)||(9756381-9756502)
chr3 (55-103)||(9686751-9686799)
chr3 (141-170)||(16011768-16011797)
[»] chr2 (1 HSPs)
chr2 (58-201)||(20694304-20694447)
[»] chr8 (3 HSPs)
chr8 (3-199)||(44688733-44688929)
chr8 (3-115)||(13170632-13170744)
chr8 (175-210)||(13170758-13170793)
[»] chr6 (7 HSPs)
chr6 (55-203)||(7041464-7041612)
chr6 (73-209)||(7046801-7046937)
chr6 (73-201)||(7025720-7025854)
chr6 (73-201)||(7012784-7012918)
chr6 (73-134)||(7029850-7029911)
chr6 (75-200)||(9159515-9159646)
chr6 (73-200)||(9170782-9170915)
[»] chr1 (8 HSPs)
chr1 (108-210)||(18991165-18991267)
chr1 (60-210)||(4428592-4428742)
chr1 (104-210)||(4439821-4439927)
chr1 (73-189)||(235195-235311)
chr1 (78-193)||(8814385-8814500)
chr1 (80-197)||(246841-246958)
chr1 (73-176)||(251412-251515)
chr1 (78-163)||(231589-231674)
[»] chr7 (2 HSPs)
chr7 (68-200)||(3695661-3695792)
chr7 (55-163)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (69-193)||(18571086-18571213)
chr5 (73-200)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 41985798 - 41985589
Alignment:
Q  1 tagacatatatgactctcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagtt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985798 tagacatatatgactctcattgttttggtttccccggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagtt 41985699  T
Q  101 ggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985698 ggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttt 41985599  T
Q  201 agtgatgatg 210  Q
    ||||||||||    
T  41985598 agtgatgatg 41985589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 41981022 - 41980825
Alignment:
Q  3 gacatatatgactctcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttgg 102  Q
    ||||| ||| ||||||||||| |||| |||||||||||||||||||| || ||||||||||| || |||| | |||| |||||||||||||||||||||     
T  41981022 gacatttatcactctcattgtgttgggttccctggtgaagatggtttcaatcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttga 41980923  T
Q  103 cgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||| | ||||||    
T  41980922 cgagtttaggggatagagttttgttcttggggaatggatgttcgttttttgcttctgcttcaaatttgtctgttgtcaaaggaaattgtattatcttt 41980825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 9494822 - 9494961
Alignment:
Q  69 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 168  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T
Q  169 tgtctgttgtcaaaggaaattgtgtcatctttagtgatga 208  Q
    |||  |||  |||||| |||||||||||||||| ||||||    
T  9494922 tgtgcgtttccaaagggaattgtgtcatctttattgatga 9494961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 9407482 - 9407327
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  155 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 210  Q
    ||| ||||||||||||| ||||| |||||| ||||||||| |||||| ||||||||    
T  9407382 ttcagcttcggatttgtgtgttgccaaagggaattgtgtcttctttattgatgatg 9407327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 210
Target Start/End: Complemental strand, 9425686 - 9425534
Alignment:
Q  58 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 157  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  158 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 210  Q
     ||||||||||||| ||||| |||||| ||||||||||||||||  |||||||    
T  9425586 agcttcggatttgtgtgttgccaaagggaattgtgtcatctttatcgatgatg 9425534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 9343961 - 9343823
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  155 ttctgcttcggatttgtctgttgtcaaaggaaattgtgt 193  Q
    ||||||||||||||||| ||||   | ||||||||||||    
T  9343861 ttctgcttcggatttgtgtgttcctagaggaaattgtgt 9343823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 9329952 - 9329804
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  155 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 203  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9329852 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9329804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 9448430 - 9448314
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  ||||||||||||||    
T  9448430 ttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgttttctgc 9448331  T
Q  155 ttctgcttcggatttgt 171  Q
    |||||||||||||||||    
T  9448330 ttctgcttcggatttgt 9448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 9617463 - 9617618
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  155 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 210  Q
    ||||||||| ||||||| ||||  |||||| |||||||||||||||| ||| ||||    
T  9617563 ttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttattgacgatg 9617618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 9336656 - 9336508
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  155 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 203  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9336556 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9336508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 9655360 - 9655492
Alignment:
Q  58 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 157  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | ||||||||||||||||| ||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatc 9655459  T
Q  158 tgcttcggatttgtctgttgtcaaaggaaattg 190  Q
     ||||||||||||| ||||  |||||| |||||    
T  9655460 agcttcggatttgtgtgtttccaaagggaattg 9655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 55 - 203
Target Start/End: Original strand, 9695616 - 9695764
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  155 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 203  Q
     |||||||| || |||| |||||  || || ||||||||||||| ||||    
T  9695716 atctgcttcagagttgtgtgttgcaaatgggaattgtgtcatctatagt 9695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 9397903 - 9397746
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttct 152  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | |||||||||||| |||||     
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttcc 9397804  T
Q  153 gcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 210  Q
    ||||| |||| |||||||| ||||| |||||| ||||||||| |||||| ||||||||    
T  9397803 gcttcagctttggatttgtgtgttgccaaagggaattgtgtcgtctttattgatgatg 9397746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 9646367 - 9646499
Alignment:
Q  58 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 157  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | ||||||||||||||||| ||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatc 9646466  T
Q  158 tgcttcggatttgtctgttgtcaaaggaaattg 190  Q
     ||||||||||||| ||||  |||||| |||||    
T  9646467 agcttcggatttgtgtgtttccaaagggaattg 9646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 9353003 - 9352871
Alignment:
Q  69 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 168  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| ||||||||||||||||||||||| || ||||     
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggttgggatc 9352904  T
Q  169 tgtctgttgtcaaaggaaattgtgtcatcttta 201  Q
    ||| | ||  |||||||||||||||||||||||    
T  9352903 tgtgtcttcccaaaggaaattgtgtcatcttta 9352871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 9433012 - 9432856
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  155 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgt 211  Q
    ||| || |||||||||| ||||  | |||| |||||| ||||||||| |||||||||    
T  9432912 ttcagcctcggatttgtgtgtttccgaagggaattgtatcatctttattgatgatgt 9432856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 9416689 - 9416534
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  155 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 210  Q
    ||| || | |||| ||| ||||   ||||| ||||||||  |||||| ||||||||    
T  9416589 ttcagccttggatatgtgtgttactaaagggaattgtgttgtctttattgatgatg 9416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  70 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 163  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 9377149 - 9377056
Alignment:
Q  108 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 201  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||| |||| ||| | ||  |||||||||||||||||||||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaattgtgtcatcttta 9377056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 9614009 - 9614104
Alignment:
Q  111 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgat 206  Q
    |||||||  ||||| |||||||||| ||||||||| ||||||||||||||||| ||| ||| | ||  ||||||||||||||| ||||||| ||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttattgat 9614104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 9626488 - 9626626
Alignment:
Q  63 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgctt 162  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| |||||||| || || || |||   || |||||||| || ||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagctt 9626587  T
Q  163 cggatttgtctgttgtcaaaggaaattgtgtcatcttta 201  Q
    ||||||||| ||||  |||||| |||||  |||||||||    
T  9626588 cggatttgtgtgtttccaaagggaattgcatcatcttta 9626626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 9441815 - 9441915
Alignment:
Q  89 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaat 188  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||| || | |||| ||| |||||||||||| |||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgtcaaagggaat 9441914  T
Q  189 t 189  Q
    |    
T  9441915 t 9441915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 9348088 - 9347957
Alignment:
Q  70 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 169  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9347989  T
Q  170 gtctgttgtcaaaggaaattgtgtcatcttta 201  Q
     | | ||   ||||||||||||||| ||||||    
T  9347988 atgtattccgaaaggaaattgtgtcgtcttta 9347957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 9369742 - 9369611
Alignment:
Q  70 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 169  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9369643  T
Q  170 gtctgttgtcaaaggaaattgtgtcatcttta 201  Q
     | | ||   ||||||||||||||| ||||||    
T  9369642 atgtattccgaaaggaaattgtgtcgtcttta 9369611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 9756502 - 9756381
Alignment:
Q  49 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 148  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  149 ttctgcttctgcttcggatttg 170  Q
     ||||| ||||| |||||||||    
T  9756402 ctctgcatctgcatcggatttg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 103  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 170
Target Start/End: Original strand, 16011768 - 16011797
Alignment:
Q  141 tgttcgttttctgcttctgcttcggatttg 170  Q
    ||||||||||||||||||||||||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttg 16011797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 20694304 - 20694447
Alignment:
Q  58 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 157  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  158 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 201  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||    
T  20694404 tgcttcggatttgtgtgttgccaaagggaattgtgtcatcttta 20694447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 44688733 - 44688929
Alignment:
Q  3 gacatatatgactctcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttgg 102  Q
    ||||| |||||||||||| ||||||| ||||| |||||||||||| ||  ||||||||||||||  ||  |||||||| | ||||||||||| |||||      
T  44688733 gacatctatgactctcatggttttgggttcccgggtgaagatggtctacggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaa 44688832  T
Q  103 cgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctt 199  Q
    ||||||||||| ||||| |||||||||||||||||| || ||| |||||| || ||||||||||||||||| ||| |||||| |||||||| |||||    
T  44688833 cgagtttagggaatagaattttgttcttggggaatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgtaatctt 44688929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 13170632 - 13170744
Alignment:
Q  3 gacatatatgactctcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttgg 102  Q
    ||||| |||||| ||||| |||  ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13170632 gacatctatgaccctcatcgttacggtttccctggtgaatatggtttaaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttgg 13170731  T
Q  103 cgagtttagggga 115  Q
    |||||||||||||    
T  13170732 cgagtttagggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 13170758 - 13170793
Alignment:
Q  175 ttgtcaaaggaaattgtgtcatctttagtgatgatg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  13170758 ttgtcaaaggaaattgtgtcatctttagtgatgatg 13170793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 203
Target Start/End: Complemental strand, 7041612 - 7041464
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  155 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 203  Q
    |||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  7041512 ttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctttagt 7041464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 209
Target Start/End: Complemental strand, 7046937 - 7046801
Alignment:
Q  73 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 172  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||  ||| |||||||     
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgta 7046838  T
Q  173 tgttgtcaaaggaaattgtgtcatctttagtgatgat 209  Q
    ||||| |||||| |||||||| ||| |||||| ||||    
T  7046837 tgttgccaaagggaattgtgtgatcattagtgctgat 7046801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 7025854 - 7025720
Alignment:
Q  73 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 166  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||   ||      ||||||||||||||||| |||||| ||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatgttcgttttctgcttgtgcttcaga 7025755  T
Q  167 tttgtctgttgtcaaaggaaattgtgtcatcttta 201  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7025754 tttgtgtgttgccaaagggaattctgtcatcttta 7025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 7012918 - 7012784
Alignment:
Q  73 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 166  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||   ||      ||||||||||||||| | |||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgttttctgcctgtgcttcgga 7012819  T
Q  167 tttgtctgttgtcaaaggaaattgtgtcatcttta 201  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7012818 tttgtgtgttgccaaagggaattctgtcatcttta 7012784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  73 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 134  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 9159515 - 9159646
Alignment:
Q  75 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcggatt 168  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcagatt 9159614  T
Q  169 tgtctgttgtcaaaggaaattgtgtcatcttt 200  Q
    ||| ||||  |||||| |||||| ||||||||    
T  9159615 tgtgtgtttccaaagggaattgtatcatcttt 9159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 9170915 - 9170782
Alignment:
Q  73 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 166  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcaga 9170816  T
Q  167 tttgtctgttgtcaaaggaaattgtgtcatcttt 200  Q
    ||||| ||||  | |||| |||||| ||||||||    
T  9170815 tttgtgtgtttcccaagggaattgtatcatcttt 9170782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 18991267 - 18991165
Alignment:
Q  108 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatg 207  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||| ||| |    
T  18991267 ttagggaatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtctttattgacg 18991168  T
Q  208 atg 210  Q
    |||    
T  18991167 atg 18991165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 4428742 - 4428592
Alignment:
Q  60 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 159  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctg 4428643  T
Q  160 cttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 210  Q
    |||| || |||||||||   ||||| |||||||||||||||| ||||||||    
T  4428642 cttctgagttgtctgttactaaagggaattgtgtcatctttattgatgatg 4428592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 4439927 - 4439821
Alignment:
Q  104 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 203  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| |||||||||||||||| |    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttatt 4439828  T
Q  204 gatgatg 210  Q
    |||||||    
T  4439827 gatgatg 4439821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 235311 - 235195
Alignment:
Q  73 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 172  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||     
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatttgtg 235212  T
Q  173 tgttgtcaaaggaaatt 189  Q
    ||||  |||||| ||||    
T  235211 tgttcccaaagggaatt 235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 8814385 - 8814500
Alignment:
Q  78 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttg 177  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| |||||||||||||||| |||||||| ||||     
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgtgtgttc 8814484  T
Q  178 tcaaaggaaattgtgt 193  Q
     |||||| ||||||||    
T  8814485 ccaaagggaattgtgt 8814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 246958 - 246841
Alignment:
Q  80 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtc 179  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||      || || |||||||||||||||| |||||||| ||||  |    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattttctgcttctgctttggatttgtgtgttcac 246859  T
Q  180 aaaggaaattgtgtcatc 197  Q
    ||||| ||||||||||||    
T  246858 aaagggaattgtgtcatc 246841  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 251412 - 251515
Alignment:
Q  73 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 172  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||| ||||||||||     
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgtg 251511  T
Q  173 tgtt 176  Q
    ||||    
T  251512 tgtt 251515  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  78 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 163  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 3695792 - 3695661
Alignment:
Q  68 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 167  Q
    |||| |||||||| ||||||| ||  ||||||||  ||||||||||||||||||||||||||| || |    |||||| |||||||||  ||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggat 3695694  T
Q  168 ttgtctgttgtcaaaggaaattgtgtcatcttt 200  Q
    ||||||| || |||||| |||||||| ||||||    
T  3695693 ttgtctgctgccaaagggaattgtgtgatcttt 3695661  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 450111 - 450219
Alignment:
Q  55 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 154  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 450210  T
Q  155 ttctgcttc 163  Q
    |||||||||    
T  450211 ttctgcttc 450219  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 18571213 - 18571086
Alignment:
Q  69 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt---ttgttcttggggaatggatgttcgttttctgcttctgcttcgg 165  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||   |||||||| || |  | | |||| ||||||  |||||||||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctgcttcgg 18571114  T
Q  166 atttgtctgttgtcaaaggaaattgtgt 193  Q
    |||||| ||||  |||||| ||||||||    
T  18571113 atttgtgtgtttccaaagggaattgtgt 18571086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 33541750 - 33541623
Alignment:
Q  73 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 172  Q
    |||||||||||| | | ||||| |||||   ||||||||| ||||  ||||||||||| |||  ||  ||||| |||||||| |||||||| ||||||||    
T  33541750 atgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttccttttctgcatctgcttctgatttgtc 33541651  T
Q  173 tgttgtcaaaggaaattgtgtcatcttt 200  Q
     |||| |||||| ||||||||| |||||    
T  33541650 cgttgccaaaggtaattgtgtcctcttt 33541623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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