View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_11 (Length: 596)
Name: NF19658_low_11
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_11 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 20 - 596
Target Start/End: Complemental strand, 28609224 - 28608648
Alignment:
| Q |
20 |
ggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatcta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609224 |
ggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatcta |
28609125 |
T |
|
| Q |
120 |
attccttttgtttctcactatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcat |
219 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28609124 |
attccttttgcttctcactatccattacaatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaggagcat |
28609025 |
T |
|
| Q |
220 |
ccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaata |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609024 |
ccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaata |
28608925 |
T |
|
| Q |
320 |
cgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacg |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28608924 |
cgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgaacg |
28608825 |
T |
|
| Q |
420 |
caacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608824 |
caacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtc |
28608725 |
T |
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| Q |
520 |
ttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgctt |
596 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608724 |
ttcgtgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgctt |
28608648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 596
Target Start/End: Original strand, 437680 - 438256
Alignment:
| Q |
20 |
ggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatcta |
119 |
Q |
| |
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|||||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
437680 |
ggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatcta |
437779 |
T |
|
| Q |
120 |
attccttttgtttctcactatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcat |
219 |
Q |
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| ||||| || ||||||||||||||||| ||||||| ||| || || || | ||||||||| |||||| |||||| |||| ||| |||||| |||||| |
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| T |
437780 |
actccttctgcttctcactatccattacaatagatagtatcccttgtggttcagcatgacttgaggtgtctactatttcagcattatcaaacaggagcat |
437879 |
T |
|
| Q |
220 |
ccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaata |
319 |
Q |
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|||||||||| | ||||||||||| | |||||| ||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
437880 |
ccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaagatcatacaaata |
437979 |
T |
|
| Q |
320 |
cgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacg |
419 |
Q |
| |
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|||||||| | ||||||| |||||||||| ||| || ||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| | | |
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| T |
437980 |
cgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgtatg |
438079 |
T |
|
| Q |
420 |
caacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtc |
519 |
Q |
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|| || ||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||| |||||| |||||| ||| | | |||||||| || |
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| T |
438080 |
cagtattagttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaacttgtacatttttcattagccgagttgtatatatc |
438179 |
T |
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| Q |
520 |
ttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgctt |
596 |
Q |
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||| |||||||||||||| | ||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||| |
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| T |
438180 |
ttcgtgaatggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgctt |
438256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 20 - 596
Target Start/End: Complemental strand, 13660595 - 13660019
Alignment:
| Q |
20 |
ggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatcta |
119 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||| ||||||||||||||| | |||| | | ||| ||||||| ||| ||||| || || |||| |
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| T |
13660595 |
ggaatatcttcacttgaatggacatcaacctccgaatatgatatagaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtcta |
13660496 |
T |
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| Q |
120 |
attccttttgtttctcactatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcat |
219 |
Q |
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||||| || |||||| |||||||||| | |||||||||||| | ||| || ||||||| | | | ||| || |||| ||||||||||||| |
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| T |
13660495 |
gatccttctgcttctcattatccattacaacagataatatgccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcat |
13660396 |
T |
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| Q |
220 |
ccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaata |
319 |
Q |
| |
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|||||||| | | | |||||||| ||| || |||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||| |
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| T |
13660395 |
ccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaagatcatacaaatt |
13660296 |
T |
|
| Q |
320 |
cgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacg |
419 |
Q |
| |
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||||| |||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| | |||||||||||||| ||| ||||||||| | | |
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| T |
13660295 |
cgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggtttatatctttgtatg |
13660196 |
T |
|
| Q |
420 |
caacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtc |
519 |
Q |
| |
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||||| ||||||||| | ||||||| | ||||| ||||| ||||||||||| | ||||| |||||| ||||||| ||| | | || |||||||| |
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| T |
13660195 |
caacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcagagttatatatgtc |
13660096 |
T |
|
| Q |
520 |
ttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgctt |
596 |
Q |
| |
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|| |||||||||| ||| |||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
13660095 |
ctcatgaatggttgaataggatgacacaacatttaaggtttcgactctgacagcatcatatgcctctccaagtgctt |
13660019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 20 - 555
Target Start/End: Complemental strand, 13653095 - 13652560
Alignment:
| Q |
20 |
ggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacatactcatcatcta |
119 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||| |||||| |||||||| | |||| | | ||| ||||||| ||| ||||| || || |||| |
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| T |
13653095 |
ggaatatcttcacctgaatggacatcaacctctgaataggatataaaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtcta |
13652996 |
T |
|
| Q |
120 |
attccttttgtttctcactatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcat |
219 |
Q |
| |
|
||||| || |||||| |||||||||| | |||||||| || || || || ||||||| | ||||| ||| |||||| | | |||| |||||| |
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| T |
13652995 |
gatccttctgcttctcattatccattacaacagataatactccttgtgtttcattatgacttttagtgtctacttcagcagctacatctaacaggagcat |
13652896 |
T |
|
| Q |
220 |
ccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaata |
319 |
Q |
| |
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||||||||| | | | |||| | ||| | | |||||||||||| |||| ||| ||||| | |||||||| || |||||||| ||||||||||| |
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| T |
13652895 |
tcgaaccactgataatcgagttcttgggtgctccgccatcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaatt |
13652796 |
T |
|
| Q |
320 |
cgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacg |
419 |
Q |
| |
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||||| |||||||| ||||| | ||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||||| ||| ||||||||| | | |
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| T |
13652795 |
cgaaagttcattttcggtaatgtcccaagattacgatcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatg |
13652696 |
T |
|
| Q |
420 |
caacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtc |
519 |
Q |
| |
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||||| ||||||||| | ||||||| | ||||| ||||| ||||||||||| | ||||| |||||| |||||||| ||| || |||| |||||||| |
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| T |
13652695 |
caacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtc |
13652596 |
T |
|
| Q |
520 |
ttcctgaatggttgcatattcggacacaacatttaa |
555 |
Q |
| |
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|| |||||||||||||| |||||||||||||| |
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|
| T |
13652595 |
ctcgtgaatggttgcataggatgacacaacatttaa |
13652560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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