View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19658_low_12 (Length: 575)
Name: NF19658_low_12
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 17 - 556
Target Start/End: Original strand, 41463528 - 41464067
Alignment:
| Q |
17 |
aatcactaagacaagctattggtttgtacctagaggtaaggtattccaagttgtatgaacagttaaaaaaggtaaattgttgatagtaaacggcatcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41463528 |
aatcactaagacaagctattggtttgtacctagaggtaaggtattccaagttgtatgaacagttaaaaaaggtaaattgttgatagtaaacggcatcaaa |
41463627 |
T |
|
| Q |
117 |
aggagaggtagagaggttgagtgagagaagttgttttgggagacagttattgggatcattcacaaaaagttcttgtttggcatagtttattttttggata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41463628 |
aggagaggtagagaggttgagtgagagaagttgttttgggagacagttattgggatcattcacaaaaagttcttgtttggcatagtttattttttggata |
41463727 |
T |
|
| Q |
217 |
ctaagattttccatataaggtagattaaggagtgtttggnnnnnnncactttcattgcataatactttgaacccagggtatccacatgtatttgtttgtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41463728 |
ctaagattttccatataaggtagattaaggagtgtttgatttttttcactttcattgcataatactttgaacccagggtatccacatgtatttgtttgtt |
41463827 |
T |
|
| Q |
317 |
tttcttctatatggaacgggaatcggattagtggttcattcatgtggcaaacagtgtctaagcatgtttcaatggttgccagtgacattacttgtgtttg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
41463828 |
tttcttctatatggaacgggaatcggattagtggttcattcatgtggcaaacagtgtctaagcatgtttctatggttgctagtgacattacttgtgtttg |
41463927 |
T |
|
| Q |
417 |
attaaggttgaagaggaaaaggaaacaaattaggatgagtttgggattgggagtcttcatgtttgtcaacggattttgggtttgtctaaattattggtat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41463928 |
attaaggttgaagaggaaaaggaaacaaattaggatgagtttgggattgggagtcttcatgtttgtcaacggattttgggtttgtctaaattattggtat |
41464027 |
T |
|
| Q |
517 |
ttggtattgtcaccaatagtgacattaatcttgccaaata |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41464028 |
ttggtattgtcaccaatagtgacattaatcttgccaaata |
41464067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University