View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_19 (Length: 523)
Name: NF19658_low_19
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 3285957 - 3285594
Alignment:
| Q |
16 |
attccattgaaacaattggctattgtgtatagtatcggaagtcaattgatacacaaaattttgcgtcgtttataccaaacatggaaacatacgatgaggg |
115 |
Q |
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| T |
3285957 |
attccattgaaacaattggctattgtgtatagcatcggaagtcaattgatacacaaaattttgcgttgtttataccaaacatggaaacatacgatgaggg |
3285858 |
T |
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| Q |
116 |
acagatgactatataattgattcttagaacatatgtaatcaattgggaagaaacattgattgaatagttgacgacgtcttatcccatcactagnnnnnnn |
215 |
Q |
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| T |
3285857 |
gcagatgactatataattgattcttagaacatatgtaatcaattgagaagaaacattgattgaatagttgacgacgtcttatcccatcactag--ttttt |
3285760 |
T |
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| Q |
216 |
nnnnnnnnnnnacaactcttttcataaacagtttctaaaacgaccctttttacaaccattaatttagaataatgcaaacttgtatacttaga---atatc |
312 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | ||||| |
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| T |
3285759 |
tttttttttttacaactcttttcataaactgtttctaaaacgaccctttttacaaccattaatttagaataatgcaaacttgaacggtcaaagctatatc |
3285660 |
T |
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| Q |
313 |
gcaatatcattggattcaatatttatttttcataaaaacttgtatacttattgttgtacgaaggat |
378 |
Q |
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| T |
3285659 |
gcaatatcattggattcaatatttatttttcataaaaacttgtatacttattgttgtacgaaggat |
3285594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 387 - 507
Target Start/End: Complemental strand, 3285388 - 3285268
Alignment:
| Q |
387 |
ccttttaattagcgatatgatcccattagtaaggaagttcttatgcatcatcacctgcaaaattagtcaagcaaagtctcatcactgtaggccacattgt |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
3285388 |
ccttttaattagcgatatgatcccattagtaaggaagttcttatgcatcatcacctccaaaattagtcaagcaaagtctcatcactttaggtcacattgt |
3285289 |
T |
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| Q |
487 |
tttgttaataagcttagtttt |
507 |
Q |
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||||||||||||||||||||| |
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| T |
3285288 |
tttgttaataagcttagtttt |
3285268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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