View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_21 (Length: 518)
Name: NF19658_low_21
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 204 - 503
Target Start/End: Complemental strand, 4078276 - 4077977
Alignment:
| Q |
204 |
cacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagtcgaac |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4078276 |
cacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttggagtcgaac |
4078177 |
T |
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| Q |
304 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatctt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078176 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatctt |
4078077 |
T |
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| Q |
404 |
cttctccactaatcatcactgctactagatcaacaatattagcctccatagtacatcggtatttttgaggaatttccattatatgaggcataaccattcc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078076 |
cttctccactaatcatcactgctactagatcaacaatattagcctccatagtacatcggtatttttgaggaatttccattatatgaggcataaccattcc |
4077977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 4078560 - 4078375
Alignment:
| Q |
18 |
ctaactttgcaacattcactagatgaacaggttcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagctttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4078560 |
ctaactttgcaacattcactagatgaacaggttcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagttttta |
4078461 |
T |
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| Q |
118 |
aaaaattagcagattcgctaggcgaataggtcattgcctagcaaatttaacagagaaaacttagtttttcaacttcaatttcattg |
203 |
Q |
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| T |
4078460 |
aaaaattagcagattcgctaggcgaataggtcattgcctagcaaatttaacagagaaaacatagtttttcaacttcaatttcattg |
4078375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 204 - 389
Target Start/End: Complemental strand, 4101031 - 4100846
Alignment:
| Q |
204 |
cacaccatccttcacattccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagtcgaac |
303 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4101031 |
cacaccatccttcacattccctcagtttaggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagttgaac |
4100932 |
T |
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| Q |
304 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgttccaccctcacttgtgtgaatatattctatgtgtcaac |
389 |
Q |
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| T |
4100931 |
aaggcataaatttcatctattatccaatcaatctcacccttgttatgtgccaccctcacttgtgtgaatatattctacgtgtcaac |
4100846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 4101313 - 4101128
Alignment:
| Q |
18 |
ctaactttgcaacattcactagatgaacaggttcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagctttta |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
4101313 |
ctaactttgcaacattcactagatgaacagattcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattaacaaaagatagagttttta |
4101214 |
T |
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| Q |
118 |
aaaaattagcagattcgctaggcgaataggtcattgcctagcaaatttaacagagaaaacttagtttttcaacttcaatttcattg |
203 |
Q |
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| T |
4101213 |
aaaaattagcagattcgctaggcgaataggtcattgcctagcaaatttaacagagaaaacatagtttttcaacttcaatttcattg |
4101128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 4502620 - 4502677
Alignment:
| Q |
229 |
tttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatcctcccta |
286 |
Q |
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|||||||||||||||| |||||| || ||||| |||||| ||||||||||||||||| |
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| T |
4502620 |
tttgggaggaattccatgaactttaggtacaactgatgcggagtccatatcctcccta |
4502677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 19568774 - 19568715
Alignment:
| Q |
220 |
ttccctcagtttgggaggaattccaagaacttgagatacaaatgatgcaaagtccatatc |
279 |
Q |
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|||| ||| |||| ||||||||||| |||||||||||||| ||||| || |||||||||| |
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| T |
19568774 |
ttccttcactttgagaggaattccatgaacttgagatacagatgatacatagtccatatc |
19568715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 19569053 - 19569000
Alignment:
| Q |
112 |
cttttaaaaaattagcagattcgctaggcgaataggtcattgcctagcaaattt |
165 |
Q |
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||||| ||||||||||| ||||||||| |||||||||| | |||||| |||||| |
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| T |
19569053 |
cttttcaaaaattagcaaattcgctagtcgaataggtcctcgcctagaaaattt |
19569000 |
T |
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