View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_23 (Length: 501)
Name: NF19658_low_23
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 489
Target Start/End: Complemental strand, 43967311 - 43966842
Alignment:
| Q |
20 |
catgtcttcctcccaaacaactcaacaacctcctccaccgtcgccaccttctcactacaaccgcattcaccatctccttcaacttcaacctctcttccaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43967311 |
catgtcttcctcccaaacaactcaacaacctcctccaccgtcgccaccttctcactacaaccgcattcaccatctccttcaacttcaacctctcttccaa |
43967212 |
T |
|
| Q |
120 |
aacctcgcttcccatttcagaaccagtagccattgccagtggactcttcatcatgcccccaccacgccttaaaaaccagtactatctcgtgaggtctgga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43967211 |
aacctcgcttcccatttcagaaccagtagccattgccagtggacttttcatcatgcccccaccacgccttaaaaaccagtactatcttgtgaggtctgga |
43967112 |
T |
|
| Q |
220 |
gaatcagagtttgagagcatgggagtgataaacacgaaccctgtagctaagacttctatggataatggtttatctgatagagggaagaaacagagtatta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43967111 |
gaatcagagtttgagagcatgggagtgataaacacgaaccctgtagctaagacttctatggataatggtttatctgatagagggaagaaacagagtatta |
43967012 |
T |
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| Q |
320 |
gagctgcttttgatttgaaagaaatgggtgcttgtgataataattgttggatttggcctgctattactcagagagcttatcaaactgctgagattattgc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43967011 |
gagctgcttttgatttgaaagaaatgggtgcttgtgataataattgttggatttggcctgctattactcagagagcttatcaaactgctgagattattgc |
43966912 |
T |
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| Q |
420 |
ttctgttaattctattaccagaaggttcttattttgcttttgtagttattcttgttaacgttgatgatgt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43966911 |
ttctgttaattctattaccagaaggttcttattttgcttttgtagttattcttgttaacgttgatgatgt |
43966842 |
T |
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