View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_25 (Length: 493)
Name: NF19658_low_25
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 34761213 - 34761669
Alignment:
| Q |
18 |
ataggaataataggatcaaccgtacagtttaatagaatagggaatctttttgaaatattaatctcaagggtctatttgagagggtgctacaaagttaacg |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||| |
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| T |
34761213 |
ataggaataattggatcaaccgtacagtttaatagaatagggaatctttttgaaatatcaatctcaagggtctatttgagagcttactacaaagtcaacg |
34761312 |
T |
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| Q |
118 |
actaatttggtgattgtacttgtctagtcgactaatattattcaaaacagggaactgcactataaaaacaatagaaaagtgcaaagcaggttattgatca |
217 |
Q |
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| T |
34761313 |
actaatttggtgattgtacttgtttagtcgactaatattattcaaaacagggaactgcactataaaaacaatagaaaagtgcaaagcaggttattgatca |
34761412 |
T |
|
| Q |
218 |
ctcgaacttattattacagaaacaaattgattcataataacagacaaacaaaatcaaataatctatgaacttggttaattttgattagttgcttgatgaa |
317 |
Q |
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| T |
34761413 |
ctcgaacttattattacagaaacaaattgattcataataacagacaaaaaaaatcaaataatctatgaacttagttaattttgattagttgcttgatgaa |
34761512 |
T |
|
| Q |
318 |
gaag-nnnnnnnncttacaaatagtatggatgaagtatatcggaatactgatgcagtagccaccaaccaggcgcgaaatccaaccagaaagaagtgagaa |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34761513 |
gaagaaaaaaaaacttacaaatagtatggatgaagtatatcggaatactgatgcagtagccaccaaccaggcgcgaaatccaaccagaaagaagtgagaa |
34761612 |
T |
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| Q |
417 |
ccctacagttaattgtgttaggtggagtatatttcaagtccaaatctttaatatttga |
474 |
Q |
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| T |
34761613 |
ccctacagttaattgtg-taggtggagtatatttcaagtccaaatctttaatatttga |
34761669 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 6556518 - 6556467
Alignment:
| Q |
76 |
taatctcaagggtctatttgagagggtgctacaaagttaacgactaatttgg |
127 |
Q |
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|||||||| ||||||||||||||| || || ||||||||| ||||||||||| |
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| T |
6556518 |
taatctcaggggtctatttgagagtgtcctgcaaagttaaagactaatttgg |
6556467 |
T |
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