View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_27 (Length: 472)
Name: NF19658_low_27
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 5 - 455
Target Start/End: Original strand, 31530596 - 31531047
Alignment:
| Q |
5 |
tgtcgaagaatatagtataaaattagcatgttgactgtctaatttaacttattttgtgagcccatatttccaataatgagtttattttaagtttatcgat |
104 |
Q |
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| T |
31530596 |
tgtcgaagaaaatagtataaaattagcatgttgactgtctaatttaatttattttgtgagcccgtatttccaataatgagtttatgttaagtttatcgat |
31530695 |
T |
|
| Q |
105 |
cgaaattagtcaagttcaatctcttaatgaagtgatctttagatttttgaacaaactcattaataatattagctgattnnnnnnnncattactg-tgtcg |
203 |
Q |
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| T |
31530696 |
cgaaattagtcgagttcaatctcttaatgaagcgatctttagatttttgaacaaactctttaataatatttgctgattaaaaaaaaaattattaatgtcg |
31530795 |
T |
|
| Q |
204 |
tttttcctgaaaaccgaataattagacaaatataattactctctaaaaataaatattgaattattaactatgcgtaccgaaggtggaaggactttttaat |
303 |
Q |
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|||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| |
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| T |
31530796 |
tttttcctaaaaatcgaatgattagacaaatataattactctctaaaaataaatattgaattattaacgatgcttaccgaaggtggatggactttttaat |
31530895 |
T |
|
| Q |
304 |
aagtctgaggtcatttcaaaagtgtttgcaagtgagaactcaaaatcttcaaaccctgaactcaacttttgcaaaagagcttgaattgctctatgaaaca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31530896 |
aagtctgaggtcatttcaaaagtgtttgcaagtgagaactcaaaatcttcaaaccctgaactcaacttttgcaaaagagcttgaattgctctatgaaaca |
31530995 |
T |
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| Q |
404 |
caatagcaaaatcattcaatgccttcacacaattccctccattaccagaggt |
455 |
Q |
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| T |
31530996 |
caatagcaaaatcattcaatggcttcacacaattccctccattaccagaggt |
31531047 |
T |
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