View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_low_3 (Length: 736)

Name: NF19658_low_3
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_low_3
NF19658_low_3
[»] chr4 (18 HSPs)
chr4 (181-475)||(36851020-36851314)
chr4 (542-726)||(36850768-36850952)
chr4 (98-162)||(22364472-22364536)
chr4 (101-165)||(32290313-32290377)
chr4 (181-264)||(5817475-5817558)
chr4 (182-264)||(25784004-25784086)
chr4 (192-264)||(51579324-51579396)
chr4 (374-472)||(26711514-26711612)
chr4 (181-262)||(42179232-42179313)
chr4 (203-264)||(43749096-43749157)
chr4 (217-269)||(25164602-25164654)
chr4 (217-264)||(17044007-17044054)
chr4 (217-264)||(37605822-37605869)
chr4 (217-264)||(55281212-55281259)
chr4 (415-465)||(1424669-1424719)
chr4 (181-263)||(41277220-41277302)
chr4 (219-264)||(20107114-20107159)
chr4 (219-264)||(39631271-39631316)
[»] chr3 (9 HSPs)
chr3 (181-270)||(23004754-23004843)
chr3 (181-264)||(33288136-33288219)
chr3 (192-264)||(36674625-36674697)
chr3 (192-256)||(39947263-39947327)
chr3 (217-264)||(38247802-38247849)
chr3 (217-264)||(50989207-50989254)
chr3 (217-264)||(51092339-51092386)
chr3 (217-263)||(48034940-48034986)
chr3 (203-264)||(9271114-9271175)
[»] chr8 (8 HSPs)
chr8 (182-263)||(41075693-41075774)
chr8 (379-471)||(17816721-17816812)
chr8 (195-257)||(8368480-8368542)
chr8 (187-264)||(11904857-11904934)
chr8 (182-263)||(31774729-31774810)
chr8 (217-256)||(4077092-4077131)
chr8 (181-264)||(28897999-28898082)
chr8 (182-264)||(2599535-2599617)
[»] chr5 (3 HSPs)
chr5 (100-156)||(35906107-35906163)
chr5 (217-264)||(13988251-13988298)
chr5 (217-264)||(36890381-36890428)
[»] chr2 (6 HSPs)
chr2 (404-472)||(28631766-28631834)
chr2 (217-269)||(13697096-13697148)
chr2 (217-264)||(14945867-14945914)
chr2 (221-264)||(23860299-23860342)
chr2 (181-262)||(24475796-24475877)
chr2 (203-264)||(32599365-32599426)
[»] chr1 (10 HSPs)
chr1 (98-264)||(526910-527077)
chr1 (98-264)||(46845667-46845834)
chr1 (98-156)||(15066021-15066079)
chr1 (217-264)||(1994957-1995004)
chr1 (217-264)||(7178242-7178289)
chr1 (98-165)||(13276475-13276542)
chr1 (217-264)||(27325759-27325806)
chr1 (181-264)||(39858351-39858434)
chr1 (217-264)||(44797597-44797644)
chr1 (187-252)||(47571664-47571729)
[»] chr6 (5 HSPs)
chr6 (380-430)||(3441305-3441355)
chr6 (414-475)||(6794193-6794254)
chr6 (224-264)||(1244694-1244734)
chr6 (217-264)||(14314117-14314164)
chr6 (217-264)||(34792782-34792829)
[»] chr7 (5 HSPs)
chr7 (192-264)||(28713681-28713753)
chr7 (217-257)||(33496510-33496550)
chr7 (397-472)||(34733870-34733945)
chr7 (217-264)||(46576373-46576420)
chr7 (192-262)||(38755001-38755071)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-148; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 181 - 475
Target Start/End: Complemental strand, 36851314 - 36851020
Alignment:
Q  181 gtgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcactgctttactaatgtgac 280  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  36851314 gtgtgaggactacatggacacatgtcacaatcatgcgtgggtgtacaagtggtacatgccacttaaggtggtctatgcatcactgctctactaatgtgac 36851215  T
Q  281 aaaatcatcaacaaaacaaaaagttggatattgttctctcattgagctgagaaattacaagacatttaagatgtaaccatttgcataaaatttaatgaaa 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36851214 aaaatcatcaacaaaacaaaaagttggatattgttctctcattgagctgagaaattacaagacatttaagatgtaaccatttgcataaaatttaatgaaa 36851115  T
Q  381 aatgttaacttgttttcttaaggcacaaattaataaattaaagatagaaattttttcttcgaacttgtatattcaatgatgtaaaaatttaagaa 475  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36851114 aatgttaacttgtgtttttaaggcacaaattaataaattaaagatagaaattttttcttcgaacttgtatattcaatgatgtaaaagtttaagaa 36851020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 542 - 726
Target Start/End: Complemental strand, 36850952 - 36850768
Alignment:
Q  542 gtctgggctatgaagcatttcgaggacatgtgtcttcgggcacttgaccttaactatacctcatctcaatcttatactgaccttagcatcaaagtgttaa 641  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36850952 gtctgggctatgaagcatttcgaggacatgtgtcttcaggcacttgaccttaactatacctcatctcaatcttatactgaccttagcatcaaagtgttaa 36850853  T
Q  642 catcttttgcaaatttctttcccttaaacagttggcctggaggaatcctctgcatcaaaactctccctccatcgcctttgcttct 726  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  36850852 catcttttgcgaatttctttcccttaaacagttggactggaggaatcctctgcatcaaaactctccctccatcgcttttggttct 36850768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 22364472 - 22364536
Alignment:
Q  98 gataatgtttgatgaacactcttttctccatagatattatgtactactctcatgtgagattgtat 162  Q
    |||||||||| |||||||| |||||||||||| ||||||||||| |||| ||||||||| |||||    
T  22364472 gataatgtttcatgaacacccttttctccatacatattatgtaccactcccatgtgagagtgtat 22364536  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 32290377 - 32290313
Alignment:
Q  101 aatgtttgatgaacactcttttctccatagatattatgtactactctcatgtgagattgtatgaa 165  Q
    ||||||| ||||||||||||||||||||| ||| ||||||| |||| ||||||||| ||||||||    
T  32290377 aatgtttcatgaacactcttttctccatacatactatgtaccactcccatgtgagagtgtatgaa 32290313  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 5817475 - 5817558
Alignment:
Q  181 gtgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||| |||| ||||||| ||||||||||||  || |||||| ||||||||||||||| ||| |||| ||||||||| ||||||    
T  5817475 gtgtggggaccacatggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcact 5817558  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 25784004 - 25784086
Alignment:
Q  182 tgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||| |||||||||| |||||||||||||| ||| |||| | ||||||||||||||| ||| |||| || |||||| ||||||    
T  25784004 tgtggggactacatgaatacatgtcacaattatgtgtggatgtacaagtggtacatgccacctaagatgatctatgtatcact 25784086  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 51579396 - 51579324
Alignment:
Q  192 acatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||||| ||||||||||||  |  |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  51579396 acatggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 51579324  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 472
Target Start/End: Original strand, 26711514 - 26711612
Alignment:
Q  374 aatgaaaaatgttaacttgttttcttaaggcacaaattaataaattaaagatagaaattttttcttcgaacttgtatattcaatgatgtaaaaatttaa 472  Q
    ||||| ||||||||||||||   ||||| |||||| |||| ||| ||||||||||| | |||||||  ||| ||||||||||||| | ||||| |||||    
T  26711514 aatgagaaatgttaacttgtgcccttaaagcacaagttaaaaaactaaagatagaagtcttttcttaaaacatgtatattcaatgttttaaaagtttaa 26711612  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 42179232 - 42179313
Alignment:
Q  181 gtgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatca 262  Q
    ||||| |||| ||||||| ||||||||||||  ||| ||||| || |||||||||||  ||| |||||||||||||| ||||    
T  42179232 gtgtggggaccacatggacacatgtcacaattgtgcatgggtgtataagtggtacataccacctaaggtggtctatgtatca 42179313  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 43749157 - 43749096
Alignment:
Q  203 tgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||| ||| ||| |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  43749157 tgtcaaaattatgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 43749096  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 25164602 - 25164654
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcactgcttt 269  Q
    |||||| ||||||||||||||| ||| |||||||||||||| |||||| ||||    
T  25164602 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactacttt 25164654  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 17044054 - 17044007
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  17044054 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 17044007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 37605822 - 37605869
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  37605822 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 37605869  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 55281259 - 55281212
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  55281259 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 55281212  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 415 - 465
Target Start/End: Complemental strand, 1424719 - 1424669
Alignment:
Q  415 aaattaaagatagaaattttttcttcgaacttgtatattcaatgatgtaaa 465  Q
    |||||||||||| |||| ||||||| |||||||| ||||||||| ||||||    
T  1424719 aaattaaagataaaaatattttcttggaacttgtgtattcaatgttgtaaa 1424669  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 41277302 - 41277220
Alignment:
Q  181 gtgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcac 263  Q
    ||||| |||| ||||| | ||||||||||||  |  |||||| |||| |||||||||||||| ||||||| |||||| |||||    
T  41277302 gtgtggggaccacatgaacacatgtcacaattgtatgtgggtgtacaggtggtacatgtcacctaaggtgatctatgtatcac 41277220  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 20107159 - 20107114
Alignment:
Q  219 gggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  20107159 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 20107114  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 39631271 - 39631316
Alignment:
Q  219 gggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  39631271 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 39631316  T

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Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 23004843 - 23004754
Alignment:
Q  181 gtgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcactgcttta 270  Q
    ||||| |||| ||||| ||||||||||||||  || |||||| ||||||||||||||| ||| |||||||||||||| |||||| |||||    
T  23004843 gtgtggggaccacatgaatacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactacttta 23004754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 33288219 - 33288136
Alignment:
Q  181 gtgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||||||| |||| || |||| |||||||  || |||||| ||||||||||||||  ||| |||||||||||||| ||||||    
T  33288219 gtgtgaggaccacatagacacatatcacaattgtgtgtgggtgtacaagtggtacataccacctaaggtggtctatgtatcact 33288136  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 36674625 - 36674697
Alignment:
Q  192 acatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||||| |||||||||||| ||  ||| || ||||||||||| ||||||| ||||||||| |||| ||||||    
T  36674625 acatggacacatgtcacaattatatgtgagtgtacaagtggtatatgtcacctaaggtggtttatgtatcact 36674697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 39947263 - 39947327
Alignment:
Q  192 acatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctat 256  Q
    ||||||| |||| |||||||  |  |||||| || ||||||||||||||||||||||||||||||    
T  39947263 acatggacacatatcacaattgtatgtgggtgtataagtggtacatgtcacttaaggtggtctat 39947327  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 38247849 - 38247802
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  38247849 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 38247802  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 50989254 - 50989207
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  50989254 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 50989207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 51092386 - 51092339
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  51092386 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 51092339  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 48034940 - 48034986
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcac 263  Q
    |||||| ||||||||||||||||||| ||||||||| |||| |||||    
T  48034940 gtgggtgtacaagtggtacatgtcacctaaggtggtttatgtatcac 48034986  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 9271175 - 9271114
Alignment:
Q  203 tgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||| ||| ||| |||||| ||||||||||||||| ||  |||||||||||||| ||||||    
T  9271175 tgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaaggtggtctatgtatcact 9271114  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 41075693 - 41075774
Alignment:
Q  182 tgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcac 263  Q
    |||| |||| ||||| | ||||||||||||  |  |||||| ||||||||||||||||||| |||||||||||||| |||||    
T  41075693 tgtggggaccacatgaacacatgtcacaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 41075774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 471
Target Start/End: Complemental strand, 17816812 - 17816721
Alignment:
Q  379 aaaatgttaacttgttttcttaaggcacaaattaataaattaaagatagaaattttttcttcgaacttgtatattcaatgatgtaaaaattta 471  Q
    |||||| |||||||| |  ||||| ||||||| ||||| |||| |||| || ||||||||| ||||||||||||||||| |||||||| ||||    
T  17816812 aaaatgctaacttgtatctttaagacacaaataaataagttaatgata-aagttttttcttagaacttgtatattcaattatgtaaaagttta 17816721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 8368480 - 8368542
Alignment:
Q  195 tggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatg 257  Q
    |||| ||||||||||||  || |||||| ||||||||||||||| ||| ||||||||||||||    
T  8368480 tggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatg 8368542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 11904934 - 11904857
Alignment:
Q  187 ggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||| ||||||| |||||||||||| ||  |||||| ||||||||||| ||| ||| ||||||||| |||| ||||||    
T  11904934 ggaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcact 11904857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 31774810 - 31774729
Alignment:
Q  182 tgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcac 263  Q
    |||| |||| ||||| | ||||||||||||  |  ||| || ||||||||||||||||||| |||||||||||||| |||||    
T  31774810 tgtggggaccacatgaacacatgtcacaattgtatgtgagtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 31774729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 4077092 - 4077131
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctat 256  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  4077092 gtgggtatacaagtggtacatgccacctaaggtggtctat 4077131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 28898082 - 28897999
Alignment:
Q  181 gtgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||| |||| ||||||| ||||||||||||  ||  ||||| || |||||||| ||| ||| |||||||||||||| ||||||    
T  28898082 gtgtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcact 28897999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 2599617 - 2599535
Alignment:
Q  182 tgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||| |||| ||||| | ||||||||||||  ||  ||||| || |||||||||||| ||| |||||||||||||| ||||||    
T  2599617 tgtggggaccacatgaacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcact 2599535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 35906163 - 35906107
Alignment:
Q  100 taatgtttgatgaacactcttttctccatagatattatgtactactctcatgtgaga 156  Q
    |||||||| |||||||| |||||||||||| ||| ||||||| ||||||||||||||    
T  35906163 taatgtttcatgaacacccttttctccatacatactatgtaccactctcatgtgaga 35906107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 13988298 - 13988251
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  13988298 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 13988251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 36890428 - 36890381
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  36890428 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 36890381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 472
Target Start/End: Complemental strand, 28631834 - 28631766
Alignment:
Q  404 cacaaattaataaattaaagatagaaattttttcttcgaacttgtatattcaatgatgtaaaaatttaa 472  Q
    |||||||||| || |||||||||||| | |||||||  ||||||||||||||||| ||||||| |||||    
T  28631834 cacaaattaaaaacttaaagatagaagtattttcttgaaacttgtatattcaatgttgtaaaagtttaa 28631766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 13697096 - 13697148
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcactgcttt 269  Q
    |||||| ||||||||||||||| ||| |||||||||||||| |||||| ||||    
T  13697096 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactacttt 13697148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 14945867 - 14945914
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  14945867 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 14945914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 23860299 - 23860342
Alignment:
Q  221 gtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||    
T  23860299 gtatacaagtggtacatgccacctaaggtggtctatgtatcact 23860342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 24475796 - 24475877
Alignment:
Q  181 gtgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatca 262  Q
    ||||| |||||||||||| ||||||||||||  ||  ||||| || ||||| |||||  ||| |||||||||||||| ||||    
T  24475796 gtgtggggactacatggacacatgtcacaattgtgtatgggtgtataagtgatacataccacctaaggtggtctatgtatca 24475877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 32599365 - 32599426
Alignment:
Q  203 tgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||| ||| ||| |||| | ||||||||||||||| ||| |||||||||||||| ||||||    
T  32599365 tgtcaaaattatgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcact 32599426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 264
Target Start/End: Original strand, 526910 - 527077
Alignment:
Q  98 gataatgtttgatgaacactcttttctccatagatattatgtactactctcatgtgagattgtatgaatgtaagnnnnnnnnng-tgtgaggactacatg 196  Q
    |||||||||| |||||||| |||||||||||| | | ||||||| |||  ||||||||| ||| ||||||| ||           |||| |||| |||||    
T  526910 gataatgtttcatgaacacccttttctccatacacactatgtaccacttccatgtgagagtgtgtgaatgtgagtttcttgtgtatgtggggaccacatg 527009  T
Q  197 gatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    || ||||||||||||  ||  ||||| || |||||||||||| ||| |||||||||||||| ||||||    
T  527010 gacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcact 527077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 264
Target Start/End: Original strand, 46845667 - 46845834
Alignment:
Q  98 gataatgtttgatgaacactcttttctccatagatattatgtactactctcatgtgagattgtatgaatgtaagnnnnnnnnng-tgtgaggactacatg 196  Q
    |||||||||| |||||||| ||||||| |||| | ||||||||| |||| ||||||||| ||| ||||||| ||           |||| |||| |||||    
T  46845667 gataatgtttcatgaacacccttttctgcatacacattatgtaccactcccatgtgagagtgtgtgaatgtgagtttcttgtgtatgtggggaccacatg 46845766  T
Q  197 gatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    || ||||||||||||  ||  ||||| || |||||||||||| ||  |||||||||||||| ||||||    
T  46845767 gacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaaggtggtctatgtatcact 46845834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 15066021 - 15066079
Alignment:
Q  98 gataatgtttgatgaacactcttttctccatagatattatgtactactctcatgtgaga 156  Q
    |||||||||| |||||||||||||| |||||| |||  |||||| ||||||||||||||    
T  15066021 gataatgtttcatgaacactcttttttccatacatacaatgtaccactctcatgtgaga 15066079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 1995004 - 1994957
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  1995004 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 1994957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 7178242 - 7178289
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||| ||||||||||||| |||||||||||||| ||||||    
T  7178242 gtgggtgtacaaatggtacatgtcacctaaggtggtctatgtatcact 7178289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 13276475 - 13276542
Alignment:
Q  98 gataatgtttgatgaacactcttttctccatagatattatgtactactctcatgtgagattgtatgaa 165  Q
    |||||||||| |||||||| |||||||||||| | | ||||||| |||| ||||||||| ||| ||||    
T  13276475 gataatgtttcatgaacacccttttctccatacacactatgtaccactcccatgtgagagtgtgtgaa 13276542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 27325759 - 27325806
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  27325759 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 27325806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 39858434 - 39858351
Alignment:
Q  181 gtgtgaggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||| |||| ||||||| ||||||||||||  ||  ||||| || |||||||| ||| ||| |||||||||||||| ||||||    
T  39858434 gtgtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcact 39858351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 44797597 - 44797644
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  44797597 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 44797644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 47571664 - 47571729
Alignment:
Q  187 ggactacatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggt 252  Q
    |||| ||||||| |||||||||||| ||  |||||| ||||||||| | ||||||| |||||||||    
T  47571664 ggaccacatggacacatgtcacaattatatgtgggtgtacaagtggcatatgtcacctaaggtggt 47571729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 3441355 - 3441305
Alignment:
Q  380 aaatgttaacttgttttcttaaggcacaaattaataaattaaagatagaaa 430  Q
    ||||||||||||||  ||||||||||||| |||| ||||||||||||||||    
T  3441355 aaatgttaacttgtggtcttaaggcacaagttaaaaaattaaagatagaaa 3441305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 475
Target Start/End: Original strand, 6794193 - 6794254
Alignment:
Q  414 taaattaaagatagaaattttttcttcgaacttgtatattcaatgatgtaaaaatttaagaa 475  Q
    |||| ||||||||||  ||||||||| |||||||| |||| |||||||||||| ||||||||    
T  6794193 taaactaaagatagatgttttttcttggaacttgtgtatttaatgatgtaaaagtttaagaa 6794254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 1244694 - 1244734
Alignment:
Q  224 tacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  1244694 tacaagtggtacatgccacttaaggtggtctatgtatcact 1244734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 14314117 - 14314164
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  14314117 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 14314164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 34792782 - 34792829
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  34792782 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 34792829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 28713753 - 28713681
Alignment:
Q  192 acatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    ||||||| |||||||||||| ||  |||||| ||||||||||| ||| ||| ||||||||| |||| ||||||    
T  28713753 acatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcact 28713681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 33496550 - 33496510
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatg 257  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  33496550 gtgggtgtacaagtggtacatgtcacctaaggtggtctatg 33496510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 472
Target Start/End: Original strand, 34733870 - 34733945
Alignment:
Q  397 cttaaggcacaaattaataaattaaagatagaaattttttcttcgaacttgtatattcaatgatgtaaaaatttaa 472  Q
    |||||||||| | |||| || |||||||||||||| |||||||  ||||||| |||| |||| ||||||| |||||    
T  34733870 cttaaggcacgagttaaaaagttaaagatagaaatattttcttaaaacttgtgtatttaatgttgtaaaagtttaa 34733945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 46576373 - 46576420
Alignment:
Q  217 gtgggtatacaagtggtacatgtcacttaaggtggtctatgcatcact 264  Q
    |||||| ||||||||||||||| ||| |||||||||||||| ||||||    
T  46576373 gtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcact 46576420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 38755001 - 38755071
Alignment:
Q  192 acatggatacatgtcacaatcatgcgtgggtatacaagtggtacatgtcacttaaggtggtctatgcatca 262  Q
    ||||||| |||||||| ||| |||  ||||| | ||||||||||||| ||| |||||||||||||| ||||    
T  38755001 acatggacacatgtcataattatgtatgggtgttcaagtggtacatgccacctaaggtggtctatgtatca 38755071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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