View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19658_low_30 (Length: 457)
Name: NF19658_low_30
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 4 - 452
Target Start/End: Original strand, 37563462 - 37563910
Alignment:
| Q |
4 |
ttaagcaattgccaatgtcattttgtttatgttgcgattcataatactctgaaagcttatagtaaagtgttattgttgcaattgctattatggttgtgat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37563462 |
ttaagcaattgccaatgtcattttgtttatgttgcgatttataatactctgaaagcttatagtaaagtgttattgttgcaattgctattatggttgtgat |
37563561 |
T |
|
| Q |
104 |
tcggttgtgcctgcataagaaaagaaatcttgatgttacaattggtatcactaaaggttttttaaatcacgatagcattgattgtaaattaatagcataa |
203 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37563562 |
tcggttgtggttgcataagaaaagaaatcttgatgttacaattggtatcactaaaggttttttaaatcacgatagcattgattgtaaattaatagcataa |
37563661 |
T |
|
| Q |
204 |
tgtatgatttgaagtagagttatagcttttcatataatatctgcttaatgttactatgtcagtgatgtggttggggatatattagaaatttggtgttgtt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37563662 |
tgtatgatttgaagtagagttatagcttttcatataatatctgcttaatgttactatgtcagtgatgtggttggggatatattagaaatttggtgttgtg |
37563761 |
T |
|
| Q |
304 |
gttaaaattgatgtaaggtttttaaaactcttggtagcattaattgttaattaataacataatatatggtttgatgtagatttatagcttttgttcataa |
403 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37563762 |
gttaaaattgatgtaaggttttttaaaatcttggtagcattaattgttaattaataacataatatatggtttgatgtagagttatagcttttgttcataa |
37563861 |
T |
|
| Q |
404 |
actatttgctgaatgtgttattatttttgatgcagttggatattattgg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37563862 |
actatttgctgaatgtgttattatttttgatgcagttggatgttattgg |
37563910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University