View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_32 (Length: 447)
Name: NF19658_low_32
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 1636908 - 1636476
Alignment:
| Q |
1 |
aataccaaaacttccattcacaaaatacatattacatgagtaacaagccaaaggaagagtacaagaattgaattgtaagcaaattttctcacttattatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1636908 |
aataccaaaacttccattcacaaaatacatattacatgagtaacaagccaaaggaagagtacaagaattgaattgtaagcaaattttctcacttattatt |
1636809 |
T |
|
| Q |
101 |
ccattgagtctcggtccagctccatcatgtcaaattttgcaactgagttatttcttaatatcgtttctcacttacaaaaattaagtggagttagttttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1636808 |
ccattgagtctcggtccagctccatcatgtcaaattttgcaactgagttatttcttaatatcgtttctcacttacaaaaattaagtggagttagttttgg |
1636709 |
T |
|
| Q |
201 |
tgtatcaatccatctctagcccttaaacaaagaaataaaaacagcacacagttgtttgttaacatatcaatgaacttataaaaagcccttgttttttcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1636708 |
tgtatcaatccatctctagcccttaaacaaagaaataaaaacagcacacagttgtttgttaacatatcaatgaacttataaaaagcccttgttttttcag |
1636609 |
T |
|
| Q |
301 |
ttaattttagatgtgttgtaagtaaaaattcttcaaagaatattcataccacccttacttcccatttgttatgctttattaaaagagaaaagccatatag |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1636608 |
ttaattttagatgtgttgtaagtaaaaattcttccaagaatattcataccacccttacttcccatttgttatgctttattaaaagagaaaagccatatag |
1636509 |
T |
|
| Q |
401 |
attcaattttattattcttttatcttcctttct |
433 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
1636508 |
attcaattttattattcttttatcttcctttct |
1636476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 27726385 - 27726430
Alignment:
| Q |
1 |
aataccaaaacttccattcacaaaatacatattacatgagtaacaag |
47 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
27726385 |
aataccaaaacttccattcacaaa-tacatattacatgagtaacaag |
27726430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3073359 - 3073405
Alignment:
| Q |
1 |
aataccaaaacttccattcacaaaatacatattacatgagtaacaag |
47 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||| |||||||||| |
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|
| T |
3073359 |
aataccaaaacttccatccacaaagtacatattacaagagtaacaag |
3073405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 21160388 - 21160425
Alignment:
| Q |
396 |
tatagattcaattttattattcttttatcttcctttct |
433 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||| |
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| T |
21160388 |
tatagattcacttttattattcttttgtcttcctttct |
21160425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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