View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_33 (Length: 446)
Name: NF19658_low_33
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 7159026 - 7158579
Alignment:
| Q |
1 |
aaatacactaatgggcttatgggttcaatacttagaactccaacgctcccctcaagctggaacaataaagattatatgcattgaggttgttacaaacaat |
100 |
Q |
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| T |
7159026 |
aaatacactaatgggcttatgggttcaatacttagaactccaacagtcccctcaagctggaacaataaagattatatgcattgaggttgttacaaataat |
7158927 |
T |
|
| Q |
101 |
ctcaatctcactggt-------ctcnnnnnnn--gcatgtattcgacattctcaagggaactggcatgttagactgtaaaattgctgactcttccatgaa |
191 |
Q |
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| T |
7158926 |
ctcaatctcactggtgttgtttctcaaaaaaaaagcatgtatccgacattctcaagggaactggcatgttagactgtaaaattgctgactcttccatgaa |
7158827 |
T |
|
| Q |
192 |
ctcctccctggaaaggaggcccatttactgatccaagagggtgccaaagccttgttagtaagctaaattatatcacta--------tcatctgttcagag |
283 |
Q |
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| T |
7158826 |
ctcctccctggacaggaggcccatttactgatccaagagggtgccaaagccttgttagtaagctaaattatatcactaattcactatcatctgttcagag |
7158727 |
T |
|
| Q |
284 |
atttcatttgttgtttcaatgttgagtcattcccttcattctccttgtgattgtctaatagggacttggttactatcggatgcctaagccctacatcgag |
383 |
Q |
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| T |
7158726 |
atttcatttgttgtttcaatgttgagtcattcccttcattctccttgtgattgtctaatagggacttggttactatcggatgcctaaggcctgcatcgag |
7158627 |
T |
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| Q |
384 |
tagtataaaatgtttggtggagtatttaagtggctcgatgtagtattt |
431 |
Q |
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| T |
7158626 |
tagtataaaatgtttggtggagtatttaagtggctcgatgtagtattt |
7158579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 35067462 - 35067422
Alignment:
| Q |
376 |
acatcgagtagtataaaatgtttggtggagtatttaagtgg |
416 |
Q |
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| T |
35067462 |
acatcgagtagtataggatgtttggtggagtatttaagtgg |
35067422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 37483092 - 37483169
Alignment:
| Q |
341 |
atagggacttggttactatcggatgcctaagccctacatcgagtagtataaaatgtttggtggagtatttaagtggct |
418 |
Q |
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| T |
37483092 |
atagggacttgggtattatggggtgcccaagttccacatcaagtagtatgggatgtttggtggagtatttaagtggct |
37483169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 411
Target Start/End: Complemental strand, 28489178 - 28489108
Alignment:
| Q |
341 |
atagggacttggttactatcggatgcctaagccctacatcgagtagtataaaatgtttggtggagtattta |
411 |
Q |
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| T |
28489178 |
atagggacttggatattatgggatgtctaagtcctacatcaagtagtatgagatgtttggttgaatattta |
28489108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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