View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_35 (Length: 436)
Name: NF19658_low_35
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_35 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 4146085 - 4145650
Alignment:
| Q |
1 |
atttgtacaagaataatctacccgcaaggaatacacaatttggcttcataggtaataaaataatgcaacttatgatttttccatgtaattcccattgctt |
100 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146085 |
atttgtacaagaaaaagctacccgcaaggaatacacaatttggcttcataggtaataaaataatgcaacttatgatttttccatgtaattcccattgctt |
4145986 |
T |
|
| Q |
101 |
agcacgttgctaaagtcaactaattgcaaactcaatagagcatctcaacgactccacaattcaacaacttcttccacgtgaatttgattaggaacatgaa |
200 |
Q |
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| T |
4145985 |
agcacgttgctaaagtcaactaattgcaaactcaatagagcatctcaacgactccacaattcaacaacttcttccacgtgaatttgattaggaacatgaa |
4145886 |
T |
|
| Q |
201 |
acaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaacaccattttgttacatgttcatggcttttctaagtcataacaaaaacc |
300 |
Q |
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| T |
4145885 |
acaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaacaccattttgttacatgttcatggcttttctaagtcataacaaaaacc |
4145786 |
T |
|
| Q |
301 |
acttgttcataacattcctcatattttgcacattttattcatgttatagtgctgtcaacgacactattacatcatccaaattactcaaagacaatgaaac |
400 |
Q |
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| T |
4145785 |
acttgttcataacattcctcatattttgcacattttattcatgttatagtgctgtcaacgacactattacatcatccaaattactcaaagacaatgaaac |
4145686 |
T |
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| Q |
401 |
aataacctcaaacaacacagacctcaagctaggatt |
436 |
Q |
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| T |
4145685 |
aataacctcaaacaacacagacctcaagctaggatt |
4145650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 258 - 436
Target Start/End: Complemental strand, 4135027 - 4134848
Alignment:
| Q |
258 |
ttttgttacatgttcatggctttt-ctaagtcataacaaaaaccacttgttcataacattcctcatattttgcacattttattcatgttatagtgctgtc |
356 |
Q |
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| T |
4135027 |
ttttgttacacatttatggctttttctaagtcataatataaatgacttattcattacattcctcatattttgcacattttattcatgttatagttctacc |
4134928 |
T |
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| Q |
357 |
aacgacactattacatcatccaaattactcaaagacaatgaaacaataacctcaaacaacacagacctcaagctaggatt |
436 |
Q |
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| T |
4134927 |
aacaacgccattacatcatcaaaatcactcaaagacaatgaaacaataacctcaaacaacacagacctcaagctaggatt |
4134848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 257 - 436
Target Start/End: Complemental strand, 4124482 - 4124303
Alignment:
| Q |
257 |
attttgttacatgttcatggcttttctaagtcataacaaaaaccacttgttcataacattcctcatattttgcacattttattcatgttatagtgctgtc |
356 |
Q |
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| T |
4124482 |
attttgttacacattaatggcttttctacgtcataatacaaatgacttattcattacagtcctcatattttgcaccttttattcatgttatagtgcaatc |
4124383 |
T |
|
| Q |
357 |
aacgacactattacatcatccaaattactcaaagacaatgaaacaataacctcaaacaacacagacctcaagctaggatt |
436 |
Q |
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| T |
4124382 |
aatgacaccattacaccatccaaatctctcaaagacaatgaaacaataacctcaaacaacacaaacttcaagctaggatt |
4124303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 214 - 436
Target Start/End: Complemental strand, 4153885 - 4153653
Alignment:
| Q |
214 |
ctcatcaaaccaaattaaatcctagtattcctcaaaaaacaccat-------tttgttacatgttcatggcttttctaagtcataacaaaaaccacttgt |
306 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| ||| | ||||||| || ||||||||||||||||| || ||| |||| | |
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| T |
4153885 |
ctcattaaaccaaactaaatcctagtattcctcaaaaaacatcatacaacaatctgttacacatttatggcttttctaagtcacaattcaaattacttct |
4153786 |
T |
|
| Q |
307 |
tcataa---cattcctcatattttgcacattttattcatgttatagtgctgtcaacgacactattacatcatccaaattactcaaagacaatgaaacaat |
403 |
Q |
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|||||| | ||||| |||||||||||| ||||||||||||||||||| |||| ||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
4153785 |
tcataattactttccttatattttgcacaatttattcatgttatagtgcaatcaatgacaccattacatcatccaaatctctcaaagacaatgaaacaat |
4153686 |
T |
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| Q |
404 |
aacctcaaacaacacagacctcaagctaggatt |
436 |
Q |
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| T |
4153685 |
aacctcaaacaacacaaatttcaagctaggatt |
4153653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 220 - 436
Target Start/End: Complemental strand, 4164236 - 4164012
Alignment:
| Q |
220 |
aaaccaaattaaatcctagtattcctcaaaaaa-cacc----attttgttacatgttcatggcttttctaagtcataacaaaaaccacttgttcataa-- |
312 |
Q |
| |
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|||||||| ||||| |||||||||||||||||| |||| | ||||||| || ||||||||||||| ||| |||| ||||||||| ||||||| |
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| T |
4164236 |
aaaccaaactaaattctagtattcctcaaaaaaacacctaacaatttgttatccatttatggcttttctaattcacaacacaaaccacttcttcataatt |
4164137 |
T |
|
| Q |
313 |
-cattcctcatattttgcacattttattcatgttatagtgctgtcaacgacactattacatcatccaaattactcaaagacaatgaaacaataacctcaa |
411 |
Q |
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| ||| |||||||| |||| |||||||||||||||||| || ||||||||| ||||||||||| |||| |||||||||||| |||||||||||||||| |
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| T |
4164136 |
acgttcatcatatttagcaccttttattcatgttatagttctaccaacgacaccattacatcatctaaatcactcaaagacaacgaaacaataacctcaa |
4164037 |
T |
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| Q |
412 |
acaacacagacctcaagctaggatt |
436 |
Q |
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| T |
4164036 |
acaacacaaatttcaagctaggatt |
4164012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 4124568 - 4124500
Alignment:
| Q |
183 |
tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaa |
252 |
Q |
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| T |
4124568 |
tttgaataggaatatgttacaaattacaaa-ctcatcaaaccaaactaagttctagtattcctcaaaaaa |
4124500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 4135160 - 4135044
Alignment:
| Q |
142 |
atctcaacgactccacaattcaacaa---cttcttccacgtgaa--tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcct |
236 |
Q |
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||||||| ||| |||||||||||||| | |||||||| ||| |||||||||||||||| |||||||||||| ||||| || || | ||| | || |
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| T |
4135160 |
atctcaatgacgccacaattcaacaataacatcttccacatgatagtttgattaggaacatgttacaaattacaaa-ctcataaagcctatctaagttct |
4135062 |
T |
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| Q |
237 |
agtattcctcaaaaaaca |
254 |
Q |
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| T |
4135061 |
agtattcctcaaaaaaca |
4135044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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