View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_36 (Length: 431)
Name: NF19658_low_36
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_36 |
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| [»] scaffold0248 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 33 - 415
Target Start/End: Complemental strand, 16659090 - 16658708
Alignment:
| Q |
33 |
atcattaagaagcatataaacatgatgagagtagtcagctcttcgagaagtctagctctactgcggtttcaaccacataacaaatcaaagcacaaatatt |
132 |
Q |
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| T |
16659090 |
atcattaagaagcatataaacatgatgagagtagtcagctcttcaagaagtctagctctactgcggtttcaaccacataacaaatcaaagcacaaatatt |
16658991 |
T |
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| Q |
133 |
atttgatcaactaaagcaccnnnnnnngattaagtggaacacaagagccggagaggaatcttgatcttgaagcaaggtattcaaagattctattataact |
232 |
Q |
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| T |
16658990 |
atttgatcaactaaagcaccaaaaaaagatcaagtggaacacaagagccggagaggaatcttgatcttgaagcaaggtattcaaagatgctattaaaact |
16658891 |
T |
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| Q |
233 |
agaaaacaagtcacaaaattaaaccgaaacagtttaagtaacaggttcaatcccaacatcatcatcaacttgaatactactagataatgacaatcaacct |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16658890 |
agaaaacaagtcacaaaattaaaccgaaacagtttaagtaacaggttcaatcccaacatcatcatcaacttgaatactactagataatgacaatcaacct |
16658791 |
T |
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| Q |
333 |
aaaggtttgagcacttacaaaagcaagacatcacttgagatttaataaagaaaaatcaaactagccagtcttggctataacgt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16658790 |
aaaggtttgagcacttacaaaagcaagacatcacttgagatttaataaagaaaaataaaactagccagtcttggctataacgt |
16658708 |
T |
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Target: scaffold0248 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 17779 - 17727
Alignment:
| Q |
313 |
tagataatgacaatcaacctaaaggtttgagcacttac-aaaagcaagacatc |
364 |
Q |
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| T |
17779 |
tagataatgataattaacctaaagatttgagcacttgctaaaagcaagacatc |
17727 |
T |
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