View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_39 (Length: 410)
Name: NF19658_low_39
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 146 - 406
Target Start/End: Original strand, 35163808 - 35164068
Alignment:
| Q |
146 |
gccggtcgtttaaccaccgactctgagggctatgtttacctgacttgcaacgacgccggcgtcgatttcatcactgcaacttccacctcactttacatca |
245 |
Q |
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| T |
35163808 |
gccggtcgtttaaccaccgactctgagggctatgtttacctgacttgcaacgacgccggcgtcgatttcatcactgcaacttccacctcactttacatca |
35163907 |
T |
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| Q |
246 |
ctgacctcttatcaacaaccgatgttcatgaatcattcaaagagtttttcacttttgaccggaaagtcagttacaccggtcatttctctccgatcatggc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35163908 |
ctgacctcttatcaacaaccgatgttcatgaatcattcaaagagtttttcacttttgaccggaaagtcagttacaccggtcatttctctccgatcatggc |
35164007 |
T |
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| Q |
346 |
cgttcaagtaactgaactggctgacggaatttttatcggcatcgccgttaaccacgccgtc |
406 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35164008 |
cgttcaagtaactgaactcgctgacggaatttttatcggcatcgccgttaaccacgccgtc |
35164068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 35163663 - 35163754
Alignment:
| Q |
1 |
ctctgtttcagacctacctatgttgtcttgtcactacatccaaaaaggttgtctcttcacaaaaccttcaaacattcctttccatattttaa |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35163663 |
ctctgtttcagacctacctatgttgtcttgtcactacatccaaaaaggttgtctcttcacaaaaccttcaaacattcctttccatattttaa |
35163754 |
T |
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