View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_low_4 (Length: 719)

Name: NF19658_low_4
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_low_4
NF19658_low_4
[»] chr3 (1 HSPs)
chr3 (11-702)||(31759592-31760282)


Alignment Details
Target: chr3 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 11 - 702
Target Start/End: Complemental strand, 31760282 - 31759592
Alignment:
Q  11 cagagatattaatgtacattatcaatttgttcctagagcattcagaagtttcaaatgctgcttcttgaagtcaaatcagcttctcaatttatacatgtag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31760282 cagagatattaatgtacattatcaatttgttcctagagcattcagaagtttcaaatgctgcttcttgaagtcaaatcagcttctcaatttatacatgtag 31760183  T
Q  111 atcactagaattctgatttcttgtttacatgcttgaaatcttttgaaaagtacctagtatattctgattaannnnnnnnnngtttaattaggctttccat 210  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||    
T  31760182 atcactagaatactgatttcttgtttacatgcttgaaatcttttgaaaagtacctagtatattctgattaattttttttt-gtttaattaggctttccat 31760084  T
Q  211 agttcactacagtgtagtttgctgcagccagtgttttgagaaacattgaaatattttgtgcaggtcatattaaattatttgctttcccacttattttatt 310  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31760083 agttcactacagtgtagtttgctgcagccactgttatgagaaacattgaaatattttttgcaggtcatattaaattatttgctttcccacttattttatt 31759984  T
Q  311 tggatgagaaatacttttctgtataaatgcacacatgttttatacaaccaaaagtatagtataaatacttaattaatgagttaaggcatagggtttggcc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31759983 tggatgagaaatacttttctgtataaatgcacacatgttttatacaaccaaaagtatagtataaatacttaattaatgagttaaggcatagggtttggcc 31759884  T
Q  411 atatgcctaagctgtaaaagaactaaccattaattaatgataacatcaagtggtaataagatgtttaggctgttaaagaaattaggctattctttccagc 510  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31759883 atatgcctaagctgtaaaagaactaaccattaattaatgacaacatcaagtggtaataagatgtttaggctgttaaagaaattaggctattctttccagc 31759784  T
Q  511 ttagtctgtctgaacagcttgatccaaaatccctcaataccttgacaaaaagttcaagaatctctttctctagttctctattttatattgtctaaatggt 610  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31759783 ttagtctgtctgaacagcttgatctaaaatccctcaataccttgacaaaaagttcaagaatctctttctctagttctctgttttatattgtctaaatggt 31759684  T
Q  611 atatttgataccatagttgattatttattctaagacaccaatacattttagttgtcatagtgtctctttaatttctattgcgggtccgattt 702  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31759683 atatttgatagcatagttgattatttattctaagacaccaatacattttagttgtcatagtgtctctttaatttctattgcgggtccgattt 31759592  T

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