View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_41 (Length: 408)
Name: NF19658_low_41
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 45625711 - 45626098
Alignment:
| Q |
1 |
gaaaagaagccacacccatttaatctacaagttagaatttccaggtgaagatgagaagaatgaaccccaggaagcactcaacattgaacgtgagggatcg |
100 |
Q |
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| T |
45625711 |
gaaaagaagccacacccatttaatctacaagttagaatttccaggtgaagatgagaagaatgaaccccaggaagcaatcaacattgaacgtgagggatcg |
45625810 |
T |
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| Q |
101 |
ttcataattcaaataaagaaccctgaagaaaaagttggtgcaggtggaggtggtttgcaaaagaaacgcaaggcggtgttcccggctcacctgcaaggac |
200 |
Q |
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| T |
45625811 |
ttcataattcaaataaagaaccctgaagaaaaagttggtgcaggtggaggtggtttgcaaaagaaacgcaaggcgatgttcccggctcacctgcaaggac |
45625910 |
T |
|
| Q |
201 |
aattaggtcatgtcagattcgccccagctgacccaccagactttctaaactatgaaggatgcgagtttttgctcatatctgcttctgaccatattgaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45625911 |
aattaggtcatgtcagattcgccccagctgacccaccagactttctaaactatgaaggatgcgagtttttgctcatatctgcttctgaccatattgaaga |
45626010 |
T |
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| Q |
301 |
tgagttgggtcttgagcttctgactgaagaaggggaacatgatgcatcctgctctgatctcctcgacacttttaaatttgaagacact |
388 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45626011 |
tgagttgggtcttgagcttctgactgaagaaggggagcatgatgcatcctgctctgatctcctcgacacttttaaatttgaagacact |
45626098 |
T |
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