View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_42 (Length: 406)
Name: NF19658_low_42
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 37496343 - 37495963
Alignment:
| Q |
11 |
agggggtagttttgaaaaaacacaaaaggtggttggaacttggaatgacaaaacaggatgctggatgtaacattgccc-ttttgttagcatttgtatggt |
109 |
Q |
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| T |
37496343 |
agggggtagttttgaaaaaacacaaaaggtggttggaacttggaatgacaaaacaggatgctggatgtaacattgccccttttgtcagcatttgtatggt |
37496244 |
T |
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| Q |
110 |
ggtcgtcataaatcgataatagaaaatgctgagaatacttttcatgtttcaagaagtaacttttcaggcaaaaagtctatcaaaatgttacaggtaagaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37496243 |
ggtcgtcataaatcgataatagaaaatgctgagaatacttttcatgtttcaagaagtaacttttcaggcaaaaagtctatcaaaatgttacaggtaagaa |
37496144 |
T |
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| Q |
210 |
aatgtgtcaaccaaatcgtgcctatcaaatttttatatctggacagcagaacttacaatgttgtatacgaaagcccaccaaagattttgctttacagtat |
309 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37496143 |
aatgtatcaaccaaatcgtgcctatcaaatatttatatctggacagcagaacttacaatgttgtatacgaaagcccaccaaagattttgctttacagtat |
37496044 |
T |
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| Q |
310 |
tcatggttagcctgctaagctccaaagcatcaagtagctgcataaaaataaaacgattaactgtccggtatgctttcaatt |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37496043 |
tcatggttagcctgctaagctccaaagcatcaagtagctgcataaaaataaaacgattaactgtccggtatgctttcaatt |
37495963 |
T |
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