View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_low_43 (Length: 397)

Name: NF19658_low_43
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_low_43
NF19658_low_43
[»] chr7 (15 HSPs)
chr7 (332-382)||(32071896-32071946)
chr7 (117-182)||(48765995-48766060)
chr7 (121-182)||(32064502-32064563)
chr7 (336-382)||(32064087-32064133)
chr7 (244-282)||(32071996-32072034)
chr7 (125-182)||(47221852-47221909)
chr7 (124-182)||(2699761-2699819)
chr7 (124-182)||(42391408-42391466)
chr7 (125-182)||(12423990-12424047)
chr7 (125-182)||(20121350-20121407)
chr7 (125-182)||(24331491-24331548)
chr7 (124-181)||(31283267-31283324)
chr7 (125-182)||(41857253-41857310)
chr7 (117-178)||(43268066-43268127)
chr7 (125-182)||(44457896-44457953)
[»] chr3 (6 HSPs)
chr3 (117-186)||(2397894-2397963)
chr3 (124-186)||(28843840-28843902)
chr3 (130-186)||(11439908-11439964)
chr3 (124-182)||(18168866-18168924)
chr3 (125-182)||(14201908-14201965)
chr3 (125-182)||(25061445-25061502)
[»] chr4 (14 HSPs)
chr4 (117-182)||(30637058-30637123)
chr4 (124-182)||(26886754-26886812)
chr4 (125-182)||(17362443-17362500)
chr4 (127-186)||(41376692-41376751)
chr4 (124-186)||(5748019-5748081)
chr4 (124-182)||(7067386-7067444)
chr4 (124-182)||(32922179-32922237)
chr4 (124-186)||(35130904-35130966)
chr4 (124-182)||(45655837-45655895)
chr4 (124-182)||(46689301-46689359)
chr4 (124-182)||(52538023-52538081)
chr4 (125-182)||(16020069-16020126)
chr4 (124-181)||(18635984-18636041)
chr4 (117-181)||(23962960-23963024)
[»] chr1 (4 HSPs)
chr1 (118-182)||(24234649-24234713)
chr1 (125-182)||(8853207-8853264)
chr1 (117-182)||(44344136-44344201)
chr1 (124-182)||(9877547-9877605)
[»] chr8 (6 HSPs)
chr8 (117-182)||(43497319-43497384)
chr8 (124-182)||(36556679-36556737)
chr8 (117-186)||(17958934-17959004)
chr8 (124-186)||(24419586-24419648)
chr8 (124-182)||(39198729-39198787)
chr8 (125-182)||(148405-148462)
[»] chr5 (12 HSPs)
chr5 (131-186)||(17759913-17759968)
chr5 (124-182)||(1099036-1099094)
chr5 (124-182)||(2467203-2467261)
chr5 (124-182)||(7601737-7601795)
chr5 (124-182)||(13577407-13577465)
chr5 (124-182)||(18707382-18707440)
chr5 (124-182)||(19984372-19984430)
chr5 (128-182)||(22621195-22621249)
chr5 (117-182)||(5239390-5239455)
chr5 (125-182)||(13455788-13455845)
chr5 (124-181)||(23226752-23226809)
chr5 (125-182)||(39589721-39589778)
[»] chr2 (8 HSPs)
chr2 (122-181)||(30842209-30842268)
chr2 (124-182)||(10192229-10192287)
chr2 (128-186)||(19079367-19079425)
chr2 (124-182)||(42030683-42030741)
chr2 (124-182)||(42950663-42950721)
chr2 (124-182)||(44490448-44490506)
chr2 (124-181)||(33274541-33274598)
chr2 (125-157)||(41678232-41678264)
[»] scaffold0200 (1 HSPs)
scaffold0200 (124-182)||(4474-4532)
[»] chr6 (3 HSPs)
chr6 (132-182)||(3012025-3012075)
chr6 (124-182)||(8487974-8488032)
chr6 (124-186)||(9899339-9899401)
[»] scaffold0009 (1 HSPs)
scaffold0009 (125-182)||(258900-258957)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 32071946 - 32071896
Alignment:
Q  332 atttaagacaatgcatgcctccttacacctataaattcaagacaatgcttt 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32071946 atttaagacaatgcatgcctccttacacctataaattcaagacaatgcttt 32071896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 48765995 - 48766060
Alignment:
Q  117 tatggcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
T  48765995 tatggcatttcaatcttcaaatttatggtcttcatctatttttacataagaatattagatttgaag 48766060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 32064563 - 32064502
Alignment:
Q  121 gcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||    
T  32064563 gcatttcaatcttcaaatttatggttttcatctatgtttacataagaatattagattggaag 32064502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 32064133 - 32064087
Alignment:
Q  336 aagacaatgcatgcctccttacacctataaattcaagacaatgcttt 382  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  32064133 aagacaatgcatgtctccttacacctataaattcaagacaatccttt 32064087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 32072034 - 32071996
Alignment:
Q  244 aagttgaagatagagacaatgcatgtctccttattgttg 282  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  32072034 aagttgaagatagagacgatgcatgtctccttattgttg 32071996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 47221852 - 47221909
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| ||||||||||||| |  || ||||||||||||||||||    
T  47221852 ttcagtcttcaaatctatgatcttcatctatgtttgtataagaatattagatttgaag 47221909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 2699761 - 2699819
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  2699761 tttcagtcttcaaatctatgatcctcttctatgtttgcataagaatattagatttgaag 2699819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 42391466 - 42391408
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  42391466 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 42391408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 12423990 - 12424047
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  12423990 ttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 12424047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 20121350 - 20121407
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  20121350 ttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 20121407  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 24331548 - 24331491
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  24331548 ttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 24331491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 31283324 - 31283267
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaa 181  Q
    ||||||||||||||| |||| || || ||||||| | ||| |||||||||||||||||    
T  31283324 tttcagtcttcaaatctatgttcctcgtctatgtttgcataagaatattagatttgaa 31283267  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 41857310 - 41857253
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  41857310 ttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 41857253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 43268066 - 43268127
Alignment:
Q  117 tatggcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagattt 178  Q
    |||||||||||| ||||||||| |||| |||||| |||| | | ||| ||||||||||||||    
T  43268066 tatggcatttcaatcttcaaatctatgatcttcaactatatttgcataagaatattagattt 43268127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 44457953 - 44457896
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  44457953 ttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 44457896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 2397963 - 2397894
Alignment:
Q  117 tatggcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    |||| ||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||    
T  2397963 tatgacatttcaatcttcaaatttatggtcttcatctatatttacataagaatattagatttgaagtttg 2397894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 28843902 - 28843840
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    ||||| ||||||||| |||| || |||||||||| | ||| ||||||||||||||||||||||    
T  28843902 tttcaatcttcaaatctatgatcctcatctatgtttgcataagaatattagatttgaagtttg 28843840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 11439964 - 11439908
Alignment:
Q  130 tcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    ||||||||| |||| ||||| ||||||| | ||| ||||||||||||||||||||||    
T  11439964 tcttcaaatctatgatcttcgtctatgtttgcataagaatattagatttgaagtttg 11439908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 18168924 - 18168866
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| ||||| ||||||| | ||| ||||||| ||||||||||    
T  18168924 tttcagtcttcaaatatatgatcttcgtctatgtttgcataagaatataagatttgaag 18168866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 14201965 - 14201908
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| ||||| | ||||||||||||||||    
T  14201965 ttcagtcttcaaatctatgatcatcgtctatgtttacataaaaatattagatttgaag 14201908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 25061445 - 25061502
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  25061445 ttcagtcttcaaatctatgatcctcctctatgtttgcataagaatattagatttgaag 25061502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 30637123 - 30637058
Alignment:
Q  117 tatggcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||| |||||||||||||| |||| |||||||| ||||| ||||||||||||||||||    
T  30637123 tatggcatttcaatcttcaaatttatgatctttatctatgtttacataagaatattagatttgaag 30637058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 26886754 - 26886812
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| ||||||||| |||| || |||||||||| ||||| ||||||||||||||||||    
T  26886754 tttcaatcttcaaatctatgatcctcatctatgtttacataagaatattagatttgaag 26886812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 17362443 - 17362500
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||||||| || || ||||||| | ||| ||||||||||||||||||    
T  17362443 ttcagtcttcaaatttatgatcctcgtctatgtttgcataagaatattagatttgaag 17362500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 41376751 - 41376692
Alignment:
Q  127 cagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    |||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||||||    
T  41376751 cagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaagtttg 41376692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 5748019 - 5748081
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||| ||||||||||||||    
T  5748019 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatataagatttgaagtttg 5748081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 7067386 - 7067444
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  7067386 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 7067444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 32922237 - 32922179
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  32922237 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 32922179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 35130966 - 35130904
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    ||||| ||||||||| |||| || || ||||||| | ||| ||||||||||||||||||||||    
T  35130966 tttcaatcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaagtttg 35130904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 45655837 - 45655895
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||||||||| || || ||||||| | ||| ||||||| ||||||||||    
T  45655837 tttcagtcttcaaatttatgatcatcgtctatgtttgcataagaatataagatttgaag 45655895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 46689301 - 46689359
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  46689301 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 46689359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 52538023 - 52538081
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  52538023 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 52538081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 16020126 - 16020069
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  16020126 ttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 16020069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 18635984 - 18636041
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaa 181  Q
    ||||| |||||||||  ||||||||||||||||| |  || |||||||||||||||||    
T  18635984 tttcaatcttcaaatccatggtcttcatctatgtttgtataagaatattagatttgaa 18636041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 23963024 - 23962960
Alignment:
Q  117 tatggcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaa 181  Q
    |||| ||||||| ||||||||| |||||| ||||||||||| | ||| | |||||||||| ||||    
T  23963024 tatgacatttcaatcttcaaatctatggttttcatctatgtttgcataacaatattagatctgaa 23962960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 24234713 - 24234649
Alignment:
Q  118 atggcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||| |||||||||||||||||||||||||||| | ||| ||||||| ||||||||||    
T  24234713 atggcatttcaatcttcaaatttatggtcttcatctatgtttgcataagaatataagatttgaag 24234649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 8853264 - 8853207
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| ||||| ||||||||||||||||||    
T  8853264 ttcagtcttcaaatctatgatcctcgtctatgtttacataagaatattagatttgaag 8853207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 44344201 - 44344136
Alignment:
Q  117 tatggcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| |||||||||||||||| |||| ||||| ||||||| | ||| ||||||| ||||||||||    
T  44344201 tatggtatttcagtcttcaaatctatgatcttcgtctatgtttgcataagaatataagatttgaag 44344136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 9877547 - 9877605
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  9877547 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 9877605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 43497384 - 43497319
Alignment:
Q  117 tatggcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||| |||||||||||||||||||||||||||| | ||| ||||||| | ||||||||    
T  43497384 tatggcatttcaatcttcaaatttatggtcttcatctatgtttgcataagaatatcatatttgaag 43497319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 36556679 - 36556737
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| |||||||||||||| || || ||||||| ||||| ||||||||||||||||||    
T  36556679 tttcaatcttcaaatttatgatcatcgtctatgtttacataagaatattagatttgaag 36556737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 17958934 - 17959004
Alignment:
Q  117 tatggcatttcagtcttcaaatttatggtcttcatctatgtat-acatgagaatattagatttgaagtttg 186  Q
    ||||||||| || |||||||||||||||||||||| ||||| | | |  ||||||||||||||||| ||||    
T  17958934 tatggcattccaatcttcaaatttatggtcttcatatatgtttgaaaaaagaatattagatttgaaatttg 17959004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 24419586 - 24419648
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    ||||| ||||||||| || |||||| |||||||| |  || ||||||||||||||||||||||    
T  24419586 tttcaatcttcaaatctacggtctttatctatgtttgtataagaatattagatttgaagtttg 24419648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 39198787 - 39198729
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  39198787 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 39198729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 148462 - 148405
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || |||||||||| | ||| ||||||||| ||||||||    
T  148462 ttcagtcttcaaatctatgatcctcatctatgtttgcataagaatattaaatttgaag 148405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 17759913 - 17759968
Alignment:
Q  131 cttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    |||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||    
T  17759913 cttcaaatttatagtcttcatctatgtttacataaaaatattagatttgaagtttg 17759968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 1099036 - 1099094
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| |||||||||||||| || || ||||||| | ||| ||||||||||||||||||    
T  1099036 tttcaatcttcaaatttatgatcctcgtctatgtttgcataagaatattagatttgaag 1099094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 2467203 - 2467261
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  2467203 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 2467261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 7601737 - 7601795
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  7601737 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 7601795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 13577407 - 13577465
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| ||||||||| |||| ||||| ||||||| | ||| ||||||||||||||||||    
T  13577407 tttcaatcttcaaatctatgatcttcgtctatgtttgcataagaatattagatttgaag 13577465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 18707440 - 18707382
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| |||||||||||||| || || ||||||| | ||| ||||||||||||||||||    
T  18707440 tttcaatcttcaaatttatgatcctcgtctatgtttgcataagaatattagatttgaag 18707382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 19984430 - 19984372
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| | ||| ||||||| | ||| ||||||||||||||||||    
T  19984430 tttcagtcttcaaatctatgatattcttctatgttttcataagaatattagatttgaag 19984372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 22621195 - 22621249
Alignment:
Q  128 agtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||||| || |||||||||| | ||| | ||||||||||||||||    
T  22621195 agtcttcaaatttatgatcctcatctatgtttgcataataatattagatttgaag 22621249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 5239455 - 5239390
Alignment:
Q  117 tatggcatttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| ||||||||||||||||||||| ||||  ||||||| | ||| ||||||||  ||||||||    
T  5239455 tatggtatttcagtcttcaaatttatgatctttgtctatgtttgcataagaatatttaatttgaag 5239390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 13455845 - 13455788
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  13455845 ttcagtcttcaaatctatgatcctcgtctatgtttgcattagaatattagatttgaag 13455788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 23226752 - 23226809
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaa 181  Q
    ||||| |||| |||| |||||||||||||||||| ||||| ||||||| | |||||||    
T  23226752 tttcaatctttaaatctatggtcttcatctatgtttacataagaatatgaaatttgaa 23226809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 39589721 - 39589778
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  39589721 ttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 39589778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 30842209 - 30842268
Alignment:
Q  122 catttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaa 181  Q
    ||||||| | || |||||||||||||||||  |||| ||||| |||||||||||||||||    
T  30842209 catttcaatttttaaatttatggtcttcattgatgtttacataagaatattagatttgaa 30842268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 10192229 - 10192287
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| |||||||||||||| || || ||||||| | ||| ||||||||||||||||||    
T  10192229 tttcaatcttcaaatttatgatcctcgtctatgtttgcataagaatattagatttgaag 10192287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 19079425 - 19079367
Alignment:
Q  128 agtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    ||||||||||| |||| || |||||||||| |  || ||||||||||||||||||||||    
T  19079425 agtcttcaaatctatgatcctcatctatgtttgtataagaatattagatttgaagtttg 19079367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 42030683 - 42030741
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| ||||||||| |||| ||||| ||||||| | ||| ||||||||||||||||||    
T  42030683 tttcaatcttcaaatctatgatcttcgtctatgtttgcataagaatattagatttgaag 42030741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 42950663 - 42950721
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  42950663 tttcagtcttcaaatctatgatcctcttctatgtttgcataagaatattagatttgaag 42950721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 44490448 - 44490506
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  44490448 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 44490506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 33274541 - 33274598
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaa 181  Q
    ||||||||||||||| |||| || || ||||||| | ||| |||||||||||||||||    
T  33274541 tttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaa 33274598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 41678232 - 41678264
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgt 157  Q
    |||| ||||||||||||||||||||||||||||    
T  41678232 ttcaatcttcaaatttatggtcttcatctatgt 41678264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 4532 - 4474
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||| |||||||||||||| || || ||||||| | ||| ||||||||||||||||||    
T  4532 tttcaatcttcaaatttatgatcctcgtctatgtttgcataagaatattagatttgaag 4474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 3012075 - 3012025
Alignment:
Q  132 ttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||| |||| ||||||||||||| | ||| ||||||||||||||||||    
T  3012075 ttcaaatctatgatcttcatctatgtttgcataagaatattagatttgaag 3012025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 8488032 - 8487974
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    ||||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  8488032 tttcagtcttcaaatatatgatcctcgtctatgtttgcataagaatattagatttgaag 8487974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 9899339 - 9899401
Alignment:
Q  124 tttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaagtttg 186  Q
    ||||| ||||||||| |||| || || ||||||| | ||| ||||||||||||||||||||||    
T  9899339 tttcaatcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaagtttg 9899401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 258900 - 258957
Alignment:
Q  125 ttcagtcttcaaatttatggtcttcatctatgtatacatgagaatattagatttgaag 182  Q
    |||||||||||||| |||| || || ||||||| | ||| ||||||||||||||||||    
T  258900 ttcagtcttcaaatctatgatcctcgtctatgtttgcataagaatattagatttgaag 258957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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