View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_44 (Length: 397)
Name: NF19658_low_44
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_44 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 83 - 278
Target Start/End: Original strand, 47649145 - 47649340
Alignment:
| Q |
83 |
acaaatgcattaaaccatgtctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttc |
182 |
Q |
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|||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
47649145 |
acaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaatgtcaagaaaaattacttacaatttc |
47649244 |
T |
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| Q |
183 |
tctcaagtcgtgttattatccttatgaacaagttcatacattatattaagtgcactagaaaattgtccaccgataccctataaaaatattcaaaat |
278 |
Q |
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| T |
47649245 |
tctgaagtggtgttattatccttgtgagcacgctcggacattatattaagtgcactacaaaattgtccaccgataccctatagaaatattcaaaat |
47649340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 277 - 375
Target Start/End: Original strand, 47649437 - 47649544
Alignment:
| Q |
277 |
atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctttgactct |
367 |
Q |
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| T |
47649437 |
atttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagttgccttagactct |
47649536 |
T |
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| Q |
368 |
cttcaaat |
375 |
Q |
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| T |
47649537 |
cttcaaat |
47649544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 36518283 - 36518168
Alignment:
| Q |
23 |
cagagaacatgaaacaccagtaagtttggattattaaccaatcgcaaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaac |
122 |
Q |
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| T |
36518283 |
cagaaaacatgaaacaccagtaagtttggattattaaccaattgcaaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaac |
36518184 |
T |
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| Q |
123 |
tcgaaataaaatttgg |
138 |
Q |
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| T |
36518183 |
tccaaataaaatttgg |
36518168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 155 - 278
Target Start/End: Original strand, 91407 - 91528
Alignment:
| Q |
155 |
aaagtaaagaaaaattacttacaatttctctcaagtcgtgttattatccttatgaacaagttcatacattatattaagtgcactagaaaattgtccaccg |
254 |
Q |
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| T |
91407 |
aaagtcaagaaaaattgcttacaatttctgg--agtcatgttattatccttgtgaacaagttcatacattatattaagtgcactagaaaattgtccaccg |
91504 |
T |
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| Q |
255 |
ataccctataaaaatattcaaaat |
278 |
Q |
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| T |
91505 |
ataccctataaaaatattcaaaat |
91528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 277 - 375
Target Start/End: Original strand, 91601 - 91708
Alignment:
| Q |
277 |
atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctttgactct |
367 |
Q |
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|||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
91601 |
atttatatacttactttgaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttcccctagttgcctttgactct |
91700 |
T |
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| Q |
368 |
cttcaaat |
375 |
Q |
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|||||||| |
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| T |
91701 |
cttcaaat |
91708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 30753272 - 30753404
Alignment:
| Q |
102 |
tctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttctctcaagtcgtgttattat |
201 |
Q |
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| T |
30753272 |
tctccatcaagccatctcaattcaaaataaaatttagacaaaattgtattctaaaagtcaagaaaaattacttccaatttctctgaagtcgtgttattat |
30753371 |
T |
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| Q |
202 |
ccttatgaacaagttcatacattatattaagtg |
234 |
Q |
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||||||||||||||||| ||||||| ||||||| |
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| T |
30753372 |
ccttatgaacaagttcagacattatcttaagtg |
30753404 |
T |
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