View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19658_low_45 (Length: 396)
Name: NF19658_low_45
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 41496970 - 41496605
Alignment:
| Q |
13 |
aatatgtcaccaaagcttaaagtgaattaatgtaaagtcaggaaatggttggtgtgcttatgcactcatctcatttcctacctaataagttgattaagta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41496970 |
aatatgtcaccaaagcttaaagtgaattaatgtaaagtcaggaaatggttggtgtgcttatgcactcatctcatttcctacctaataagttgattaagta |
41496871 |
T |
|
| Q |
113 |
tattgctaaaaattgtagttttgtctaatgtgcacaaatttatttttgatcatacgattaataaattatatcatatcacatttgattcaattataaaacg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41496870 |
tattgctaaaaattgtagttttgtctaatgtgcacaaatttatttttgatcatacgattaataaattacatcatatcacatttgattcaattataaaacg |
41496771 |
T |
|
| Q |
213 |
aattaatatgtaaaaataaacttatacattatgtcagatttgtctcatctgtataccatataattggccaaagactgtattggtactactaaagggcaga |
312 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41496770 |
aactaatatgtaaaaataaacttatacattatgcaagatttgtctcatctgtataccatataactggccaaagactgtattggtactactaaagggcaga |
41496671 |
T |
|
| Q |
313 |
gcatttgggaagatggactttgatttaggacagatcaatggatcaaaatcacaacagtgggggtag |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41496670 |
gcatttgggaagatggactttgatttaggacagatcaatggatcaaaatcacaacagtgggggtag |
41496605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University