View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_48 (Length: 376)
Name: NF19658_low_48
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 49721942 - 49721590
Alignment:
| Q |
1 |
aacattattaagtattaacctttcatccctnnnnnnnngtattaacctttcaaaacaagatcttgctttctattctatctaattattccaaattgtctaa |
100 |
Q |
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| T |
49721942 |
aacattatttagtattaacctttcatccctaaaaaaaagtattaacctttcaaaacaagatcttgctttctattctatctaattattccaaattgtctaa |
49721843 |
T |
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| Q |
101 |
taaagaaaaattacttccatattaccagtcacttttaactttcacaaatcattgtttttctccatgttttatacttgaacgtttaaaaaatggatgcacg |
200 |
Q |
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| T |
49721842 |
taaagaaaa-ttacttccatattaccagtcacttttaactttcataaatcattgtttttctccatgttttatacttgaacgtttaaaaaatggatgcacg |
49721744 |
T |
|
| Q |
201 |
gtttaggagaaaatcttgtgtgatgacaaccacaaataaactattgtagaagaataannnnnnnnnnnngaataaaagaagaataaatatttaaatgacc |
300 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49721743 |
gtttaggagaaaatcttgtgcgatgacaacctcaaataaactattgtagaagaataa-atattttttttgaataaaagaagaataaatatttaaatgacc |
49721645 |
T |
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| Q |
301 |
tgtatttttgaaataactaaattatgtgtatttttatatgcgtgtttaagtaata |
355 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
49721644 |
tgtatttttgaaataactaaattatatgtatttttatatgtgtgtttaagtaata |
49721590 |
T |
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