View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_50 (Length: 369)
Name: NF19658_low_50
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_50 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 34927889 - 34927521
Alignment:
| Q |
1 |
aaaagtgagtgaatatttttggaggcctaaattaataacttcattatgccttctcataggaacttaagtacgaatgattctagaaaatgagttcacactt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34927889 |
aaaagtgagtgaatatttttggaggcctaaagtaataacttcattatgccttctcataggaacttaagtatgaatgattctagaaaatgagttcacactt |
34927790 |
T |
|
| Q |
101 |
gtgcattgttttgtgcagaatccatacacgttggatgatccttgtggctcaagtagtggaccagcaatatcagtagcagcaaatttggtggctgtgtcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34927789 |
gtgcattgttttgtgcagaatccatacacgttggatgatccttgtggctcaagtagtgggccagcaatatcagtagcagcaaatttggtggctgtgtcac |
34927690 |
T |
|
| Q |
201 |
ttggtactgaaactgatggctccattttatgcccttcatgtatgaactcagtagtaggcatcaaaccaacagtaggtctcactagtagagcaggtgtagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34927689 |
ttggtactgaaactgatggctccattttatgcccttcatgtatgaactcagtagtaggcatcaaaccaacagtaggtctcactagtagagcaggtgtagt |
34927590 |
T |
|
| Q |
301 |
tccaattagcccaaggcaagacacagttgggtaagcctaaatatatgtggcaaattggcaatacctatg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34927589 |
tccaattagcccaaggcaagacacagttgggtaagcctaaatatatgtggcaaattggcaatacctatg |
34927521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 368
Target Start/End: Complemental strand, 34932810 - 34932443
Alignment:
| Q |
12 |
aatatttttggaggcctaaattaataacttcattatgccttctcataggaacttaagtacgaatg---attctagaaaatgag---ttcacacttgtgca |
105 |
Q |
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|||||||||| ||||||||| ||| |||||||||||||| ||||||||||| |||| ||||| ||||||||||||||| ||||||||||||| |
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| T |
34932810 |
aatatttttgaaggcctaaaggaatggtttcattatgccttcccataggaactttagtatgaatggtgattctagaaaatgaggaattcacacttgtgc- |
34932712 |
T |
|
| Q |
106 |
ttgttttgtgcagaatccatacacgttggatgatccttgtggctcaagtagtggaccagcaatatcagtagcagcaaatttggtggctgtgtcacttggt |
205 |
Q |
| |
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|| ||||||||||||||||||| |||| | | || ||||| ||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
34932711 |
ttccgttgtgcagaatccatacacattgggtaaaccctgtggatcaagcagtggatcagcaatatcagtagcagcaaatatggtaactgtgtcacttggt |
34932612 |
T |
|
| Q |
206 |
actgaaactgatggctccattttatgcccttcatgtatgaactcagtagtaggcatcaaaccaacagtaggtctcactagtagagcaggtgtagttccaa |
305 |
Q |
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|||||||| |||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |
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| T |
34932611 |
actgaaacggatggctccattttatgcccttcaggttttaactcagtagtaggcatcaaaccaacagttggcctaactagtagagcaggtgtagttccaa |
34932512 |
T |
|
| Q |
306 |
ttagcccaaggcaagacacagttgggtaagcctaaatata------tgtggcaaattggcaatacctat |
368 |
Q |
| |
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||||||||||||| || |||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
34932511 |
ttagcccaaggcaggatacagttgggtaagcctgtatatatacgtgtgtggcaaattggcaatacctat |
34932443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 106 - 339
Target Start/End: Complemental strand, 34898474 - 34898241
Alignment:
| Q |
106 |
ttgttttgtgcagaatccatacacgttggatgatccttgtggctcaagtagtggaccagcaatatcagtagcagcaaatttggtggctgtgtcacttggt |
205 |
Q |
| |
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|||| ||||||||||||||||||| |||| ||| || ||||| |||||||||||| |||||||||||||||| |||||||||||| || ||||||||||| |
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| T |
34898474 |
ttgtgttgtgcagaatccatacacattgggtgaaccctgtggatcaagtagtggatcagcaatatcagtagctgcaaatttggtgactctgtcacttggt |
34898375 |
T |
|
| Q |
206 |
actgaaactgatggctccattttatgcccttcatgtatgaactcagtagtaggcatcaaaccaacagtaggtctcactagtagagcaggtgtagttccaa |
305 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34898374 |
actgaaaccgatggctccattttatgcccttcaaatatgaattcagtagtaggcatcaaaccaacagttggtctcactagtagagcaggtgtagttccag |
34898275 |
T |
|
| Q |
306 |
ttagcccaaggcaagacacagttgggtaagccta |
339 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
34898274 |
ttagcccaaggcaagacacagttgggtaagccta |
34898241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 50 - 336
Target Start/End: Complemental strand, 34912134 - 34911845
Alignment:
| Q |
50 |
cttctcataggaacttaagtacgaatgattctagaaaatgag---ttcacacttgtgcattgttttgtgcagaatccatacacgttggatgatccttgtg |
146 |
Q |
| |
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||||| || ||||||| |||| |||||||||| ||||||||| |||| || ||||| || | ||||||||||||||||||| |||||||||||||||| |
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| T |
34912134 |
cttcttattggaactttagtatgaatgattcttgaaaatgaggagttcaaacatgtgctttttgttgtgcagaatccatacacattggatgatccttgtg |
34912035 |
T |
|
| Q |
147 |
gctcaagtagtggaccagcaatatcagtagcagcaaatttggtggctgtgtcacttggtactgaaactgatggctccattttatgcccttcatgtatgaa |
246 |
Q |
| |
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| |||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| | | || |
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| T |
34912034 |
gttcaagtagtggatcggcaatatcagtagcagcaaatctggttactgtgtcacttggtactgaaaccgatggctccattttatgcccttcaggccttaa |
34911935 |
T |
|
| Q |
247 |
ctcagtagtaggcatcaaaccaacagtaggtctcactagtagagcaggtgtagttccaattagcccaaggcaagacacagttgggtaagc |
336 |
Q |
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||| || || ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34911934 |
ctctgtggtgggccttaaaccaacagttggtctcactagtagagcaggtgtagttccaattagcccaaggcaagacacagttgggtaagc |
34911845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 95 - 338
Target Start/End: Complemental strand, 34921892 - 34921649
Alignment:
| Q |
95 |
acacttgtgcattgttttgtgcagaatccatacacgttggatgatccttgtggctcaagtagtggaccagcaatatcagtagcagcaaatttggtggctg |
194 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||| |||||||||||| ||| |
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| T |
34921892 |
acacatgtgctttgtgttgtgcagaatccatacacattggatgatccctgtggatcaagtagtggatcagcaatatcagtagctgcaaatttggtgactg |
34921793 |
T |
|
| Q |
195 |
tgtcacttggtactgaaactgatggctccattttatgcccttcatgtatgaactcagtagtaggcatcaaaccaacagtaggtctcactagtagagcagg |
294 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||| || | |||||||| || ||||||||||||||||| ||| |||||||||||||||| |
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| T |
34921792 |
tgtcacttggtaccgaaactgatggctccatcttatgcccttcaggtcttaactcagtggtgggcatcaaaccaacagttggtatcactagtagagcagg |
34921693 |
T |
|
| Q |
295 |
tgtagttccaattagcccaaggcaagacacagttgggtaagcct |
338 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
34921692 |
tgtaattccaattagcccaaggcaagacacagtcgggtaagcct |
34921649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5713232 - 5713298
Alignment:
| Q |
1 |
aaaagtgagtgaa-tatttttggaggcctaaattaataacttca--ttatgccttctcataggaact |
64 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||| |
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|
| T |
5713232 |
aaaagtgagtgaaatatttttggaggcctaaagtaataacttcagcatatgctttctcataggaact |
5713298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 40291761 - 40291862
Alignment:
| Q |
2 |
aaagtgagtgaatatttttggaggcctaaattaataacttca--ttatgccttctcataggaacttaagtacgaat-gattctagaaaatgagttcacac |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || ||| | |||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
40291761 |
aaagtgagtgaatatttttggaggcctaaagtaataactacagcatatactttctcataggaacttaagtatgaatggattctagaaaatgagttcacac |
40291860 |
T |
|
| Q |
99 |
tt |
100 |
Q |
| |
|
|| |
|
|
| T |
40291861 |
tt |
40291862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2882153 - 2882088
Alignment:
| Q |
1 |
aaaagtgagtgaatatttttggaggcctaaattaataacttca--ttatgccttctcataggaact |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
2882153 |
aaaagtgagtgaatatttttggaggcctaaagtaataacttcagcatatgctttctcataggaact |
2882088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16189895 - 16189960
Alignment:
| Q |
1 |
aaaagtgagtgaatatttttggaggcctaaattaataacttca--ttatgccttctcataggaact |
64 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |
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| T |
16189895 |
aaaagtgagtgaatatttttggaggcctaaagtaataacttcagcatatgctttctcataggaact |
16189960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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