View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_51 (Length: 369)
Name: NF19658_low_51
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 29621727 - 29621500
Alignment:
| Q |
1 |
catcctgaggtggcggcaaatccagtcctaaaattagaaatgtttctttggcggatgcatattgctcagctcccccatctgattggtcctccatattttc |
100 |
Q |
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| T |
29621727 |
catcctgaggtggcggcaaatccagtcctaacattagaaatgtttctttggcggatgcatattgctcagctcccctgtctgattggtcctccatattttc |
29621628 |
T |
|
| Q |
101 |
tttctcatcaatgatccttttgttaggaatcactttaacaacctcaagttcaccctgcaagcattgtaaatttaatacaaaaaacataactgaaagcgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29621627 |
tttctcatcaatgatccttttgttaggaatcactttaacaacctcaagttcaccctgcaagcattgtaaatttaatacaaaaaacataactgaaagcgac |
29621528 |
T |
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| Q |
201 |
tagttgcaaccagctagaatatatcgat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29621527 |
tagttgcaaccagctagaatatatcgat |
29621500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 29621457 - 29621376
Alignment:
| Q |
271 |
cactcataaatgatgctcgtattcttttctgatggtttaagatcagcatgcagtgtatcaagaagccataacatgaacttag |
352 |
Q |
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| T |
29621457 |
cactcataaatgatgctcgtattcttttccgattgtttaagatcagcatgcagtgtatcaagaagccataacatgaacttag |
29621376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 29660994 - 29660923
Alignment:
| Q |
118 |
ttttgttaggaatcactttaacaacctcaagttcaccctgcaagcattgtaaatttaatacaaaaaacataa |
189 |
Q |
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| T |
29660994 |
ttttgttaggaatatctttaacaacctcaagttcaccctgcaagcacagtaaatttaatacataaaacataa |
29660923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 29660841 - 29660773
Alignment:
| Q |
271 |
cactcataaatgatgctcgtattcttttctgatggtttaagatcagcatgcagtgtatcaagaagccat |
339 |
Q |
| |
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|||||||| || |||||| | ||||| | || ||||||||||||||||||||||||| |||||||||| |
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| T |
29660841 |
cactcatatattatgctcatgttcttctttggaggtttaagatcagcatgcagtgtattaagaagccat |
29660773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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