View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19658_low_54 (Length: 363)
Name: NF19658_low_54
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 48964750 - 48964408
Alignment:
| Q |
7 |
gtgataagaaattaaatttgaagctgtagcatatttctcagttagaaaacaaggtaaggaacaaaggatgagtatctcattctttctaaactttctttct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48964750 |
gtgataagaaattaaatttgaagctgtagcatatttctcagttagaaaacaaggtaaggaacaaaggatgagtatctcattctttctaaactttctttct |
48964651 |
T |
|
| Q |
107 |
tctaactcttttattcaatgcaaagcactggaacatgaaactttttacatacttcagttaaccatgatcattccattcagtcttctggcatagtttaata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48964650 |
tctaactcttttattcaatgcaaagcactggaacatgaaactttttacatacttcagttaaccatgatcattccattcagtcttctggcatagtttaata |
48964551 |
T |
|
| Q |
207 |
agggatgacaaaattattagtcattttccaattacaaatctctctttagtgcgcttcaagatgggggcatctgtacagccctatatgcctaataacaata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48964550 |
agggatgacaaaattattagtcattttccaattagaaatctctctttagtgcgcttcaagatgggggcatctgtacagccctatatgcctaataacaata |
48964451 |
T |
|
| Q |
307 |
taacccctaaaattgccaagacaaatcattaatggttcatttt |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48964450 |
taacccctaaaattgccaagacaaatcattaatggttcatttt |
48964408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University