View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_56 (Length: 350)
Name: NF19658_low_56
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 32248167 - 32247849
Alignment:
| Q |
16 |
atgtaagaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaatgaagaagcattagagtatgtggttttcaagacaaa |
115 |
Q |
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| T |
32248167 |
atgtaagaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaacgaagaagcattagagtatgtggttttcaagacaaa |
32248068 |
T |
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| Q |
116 |
cgacctagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgcgaggttcttgaaaatgctttcggccttcgtccacgtgatgtcactcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32248067 |
cgacctagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgcgaggttcttgaaaatgctttcggccttcgtccacgtgatgtcactcaa |
32247968 |
T |
|
| Q |
216 |
atcaagttcagtggaaaccgtggtcctttggttcatcctcaatctcaaccacaatcttagtaaaacaatcacaatctcaataaaacaatgcatgctatgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32247967 |
atcaagttcagtggaaaccgtggtcctttggttcatcctcaatctcaaccacaatcttagtaaaacaatcacaatctcaataaaacaatgcatgctatgc |
32247868 |
T |
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| Q |
316 |
aatgcaatatgaggtggct |
334 |
Q |
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||||||||||||||||||| |
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| T |
32247867 |
aatgcaatatgaggtggct |
32247849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 32242337 - 32242094
Alignment:
| Q |
16 |
atgtaagaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaatgaagaagcattagagtatgtggttttcaagacaaa |
115 |
Q |
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| T |
32242337 |
atgtaagaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaacgaagaagcattagagtatgtggttttcaagacaaa |
32242238 |
T |
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| Q |
116 |
cgacctagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgcgaggttcttgaaaatgctttcggccttcgtccacgtgatgtcactcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32242237 |
cgacctagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgtgaggttcttgaaaatgctttcggccttcgtccacgtgatgtcactcaa |
32242138 |
T |
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| Q |
216 |
atcaagttcagtggaaaccgtggtcctttggttcatcctcaatc |
259 |
Q |
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| T |
32242137 |
atcaagttcagtggaaaccgtggtcctttggttcaccctcaatc |
32242094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 32252917 - 32252599
Alignment:
| Q |
16 |
atgtaagaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaatgaagaagcattagagtatgtggttttcaagacaaa |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| ||||||||||| ||||||||||| |
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| T |
32252917 |
atgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttgagtatgtggtgttcaagacaaa |
32252818 |
T |
|
| Q |
116 |
cgacctagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgcgaggttcttgaaaatgctttcggccttcgtccacgtgatgtcactcaa |
215 |
Q |
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|||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
32252817 |
cgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggccttcgtccacgtgatgtcactcaa |
32252718 |
T |
|
| Q |
216 |
atcaagttcagtggaaaccgtggtcctttggttcatcctcaatctcaaccacaatcttagtaaaacaatcacaatctcaataaaacaatgcatgctatgc |
315 |
Q |
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||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32252717 |
atcaagttcagtggaaaccgtggtcctctagttcaccctcaatctcaaccacaatctcagtaaaacaatcacaatatcaataaaacaatgcatgctatgc |
32252618 |
T |
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| Q |
316 |
aatgcaat-atgaggtggc |
333 |
Q |
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|||||||| |||||||||| |
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| T |
32252617 |
aatgcaataatgaggtggc |
32252599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 30605453 - 30605695
Alignment:
| Q |
21 |
agaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaatgaagaagcattagagtatgtggttttcaagacaaacgacc |
120 |
Q |
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|||| ||||||| || ||||||| ||||| ||||| ||||||| | | ||||| || | ||||||||||| ||||| | || ||||||||||| ||| |
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| T |
30605453 |
agaaagggacagatggtggtggtaccacagaactttgtggtggtgcagcaagctggagaggaagaagcatttgagtacatagtgttcaagacaaatgacg |
30605552 |
T |
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| Q |
121 |
tagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgcgaggttcttgaaaatgctttcggccttcgtccacgtgatgtcactcaaatcaa |
220 |
Q |
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| T |
30605553 |
gagcttctgttaacaatgtaaagtaggtgttcagggccactcctgcagaggttcttgcaaatgtttttggccttcctcaacgcgaagtatctgaattaaa |
30605652 |
T |
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| Q |
221 |
gttcagtggaaaccgtggtcctttggttcatcctcaatctcaa |
263 |
Q |
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| T |
30605653 |
gcaaggtggaaaccgtggccctttggttcaccctcaatctcaa |
30605695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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