View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_low_57 (Length: 346)

Name: NF19658_low_57
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_low_57
NF19658_low_57
[»] chr4 (12 HSPs)
chr4 (1-330)||(46303038-46303366)
chr4 (212-318)||(46260219-46260326)
chr4 (26-123)||(46028656-46028750)
chr4 (20-101)||(46302622-46302699)
chr4 (59-101)||(46028755-46028797)
chr4 (59-101)||(46259774-46259816)
chr4 (50-123)||(46259841-46259915)
chr4 (150-255)||(46302825-46302930)
chr4 (183-221)||(46306664-46306702)
chr4 (50-123)||(46028452-46028524)
chr4 (50-123)||(46260048-46260120)
chr4 (50-123)||(46302729-46302806)
[»] chr8 (1 HSPs)
chr8 (187-244)||(4524663-4524720)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 46303038 - 46303366
Alignment:
Q  1 tgttcatcatccgaatctgaatcggcagtgatatggtgcaagaagatttattagaataattgggatgcaaatcataatctagtttatattatagaagatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303038 tgttcatcatccgaatctgaatcggcagtgatatggtgcaagaagattgattagaataattgggatgcaaatcataatctagtttatattatagaagatt 46303137  T
Q  101 actgaaaacaaacatgcagaaagtacagttttatacaggaaggagcattctctggccaacaacataagtcaggaataacataaacccactaacacacatg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46303138 aatgaaaacaaacatgcagaaagtacagttttatacaggaaggagcattctctggccaacaacataagtcaggaataacat-aacccactaacacacatg 46303236  T
Q  201 attccaacctataaatgaaagtactcaattaactgctgctatattaataactactcttattgatattctttctcttcttctcagccatcccaatcttctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303237 attccaacctataaatgaaagtactcaattaactgctgctatattaataactactcttattgatattctttctcttcttctcagccatcccaatcttctt 46303336  T
Q  301 ctcacttatttcatcagctcatcggttcat 330  Q
    ||||||||||||||||||||||||||||||    
T  46303337 ctcacttatttcatcagctcatcggttcat 46303366  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 212 - 318
Target Start/End: Original strand, 46260219 - 46260326
Alignment:
Q  212 taaatgaaagtactcaattaactgctgctatattaataactactcttattgatattctttctcttct-tctcagccatcccaatcttcttctcacttatt 310  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||||||  ||  ||||||||| |||| ||| ||||||||    
T  46260219 taaatgagagtcctcgattaactgctgctatattaataactactcttattgctcttctttctcttctacctaggccatcccattcttgttcccacttatt 46260318  T
Q  311 tcatcagc 318  Q
    ||||||||    
T  46260319 tcatcagc 46260326  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 46028750 - 46028656
Alignment:
Q  26 cagtgatatggtgcaagaagatttattagaataattgggatgcaaatcataatc-tagtttatattatagaagattactgaaaacaaacatgcagaaag 123  Q
    |||||||||||| ||||||||||    ||||||||||||||||||||||||||| |||||||||||| ||||||||| | | || ||||||||| ||||    
T  46028750 cagtgatatggttcaagaagatt----agaataattgggatgcaaatcataatcttagtttatattacagaagattattaataataaacatgcataaag 46028656  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 46302622 - 46302699
Alignment:
Q  20 aatcggcagtgatatggtgcaagaagatttattagaataattgggatgcaaatcataatctagtttatattatagaagatta 101  Q
    ||||| |||||||||||| ||||||||||    ||||||| ||||||| |||||||||| |||||||||||| |||||||||    
T  46302622 aatcgacagtgatatggttcaagaagatt----agaataactgggatggaaatcataatatagtttatattacagaagatta 46302699  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 46028797 - 46028755
Alignment:
Q  59 attgggatgcaaatcataatctagtttatattatagaagatta 101  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  46028797 attgggatgcaaatcataatctagtttatattagagaagatta 46028755  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 46259774 - 46259816
Alignment:
Q  59 attgggatgcaaatcataatctagtttatattatagaagatta 101  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  46259774 attgggatgcaaatcataatctagtttatattagagaagatta 46259816  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 46259841 - 46259915
Alignment:
Q  50 attagaataattgggatgcaaatcataatc-tagtttatattatagaagattactgaaaacaaacatgcagaaag 123  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||||||||| | | || ||||||||| ||||    
T  46259841 attagaatgattgggatgcaaatcataatcttagtttatattacagaagattattaataataaacatgcataaag 46259915  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 46302825 - 46302930
Alignment:
Q  150 ctctggccaacaacataagtcaggaataacataaacccactaacacacatgattccaacctataaatgaaa-gtactcaattaactgctgctatattaat 248  Q
    |||| ||||||||||||| | | | ||||||||| |||||||||||||||||||||||| ||||| | ||| |||||||| ||| ||||||  ||||||     
T  46302825 ctctagccaacaacataaattacgcataacataa-cccactaacacacatgattccaacttataatttaaaggtactcaagtaattgctgccttattaaa 46302923  T
Q  249 aactact 255  Q
    |||||||    
T  46302924 aactact 46302930  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 46306664 - 46306702
Alignment:
Q  183 aacccactaacacacatgattccaacctataaatgaaag 221  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46306664 aacccactaacacacatgattccaacctataaatgaaag 46306702  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 46028524 - 46028452
Alignment:
Q  50 attagaataattgggatgcaaatcataatctagtttatattatagaagattactgaaaacaaacatgcagaaag 123  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||  ||| ||| |||||||||||| ||||    
T  46028524 attagaataattgggatgcaaactataatctag-ttatattacagaaacttagtgataacaaacatgcataaag 46028452  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 46260048 - 46260120
Alignment:
Q  50 attagaataattgggatgcaaatcataatctagtttatattatagaagattactgaaaacaaacatgcagaaag 123  Q
    ||||||||||||||||||||||  ||||||||| |||||||| ||||  ||| ||| |||||||||||| ||||    
T  46260048 attagaataattgggatgcaaactataatctag-ttatattacagaaacttagtgataacaaacatgcataaag 46260120  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 46302729 - 46302806
Alignment:
Q  50 attagaataattgggatgcaaatcataatctagt---ttatattatagaagattactgaa-aacaaacatgcagaaag 123  Q
    |||| ||||||| |||||||||||||||||||||   |||||||| ||||||||| | || ||| |||||||||||||    
T  46302729 attaaaataattaggatgcaaatcataatctagtttattatattacagaagattattaaataaccaacatgcagaaag 46302806  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 4524663 - 4524720
Alignment:
Q  187 cactaacacacatgattccaacctataaatgaaagtactcaattaactgctgctatat 244  Q
    |||||||||||||||||||||||||||| ||||||||||  | |||||||| ||||||    
T  4524663 cactaacacacatgattccaacctataattgaaagtacttcagtaactgctcctatat 4524720  T

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