View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_6 (Length: 664)
Name: NF19658_low_6
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 586
Target Start/End: Complemental strand, 41497790 - 41497222
Alignment:
| Q |
18 |
aaacaaactaattggataatacttttactctaccttgggggagaagattcgctgcaaaattgtaaggaaaggttaagccatgagatttataacctaggtg |
117 |
Q |
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| T |
41497790 |
aaacaaactaattggataatacttttactctaccttgggggagaagattcactccaaaattgtaaggaaaggttaagccatgagatttataacctaggtg |
41497691 |
T |
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| Q |
118 |
agtcttagaatttggtttgaacttaactcaacacttcactctcgtaccaatttaaaatttgtgtcgagttaaactcaacccttacaaaatcagggtgcaa |
217 |
Q |
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| T |
41497690 |
agtcttagaatttggtttgaacttaattcaacccttcactttcgtaccaatttaaaatttgtgtcgagttagactcaacccttacaaaatcagggtgcaa |
41497591 |
T |
|
| Q |
218 |
gaaaatacggtacacgagtaactaatcctgaaattgtgttcttttatgtttatttttactatttcctttgtttcaaatccaattctcctatgtagtctga |
317 |
Q |
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| T |
41497590 |
gaaaatacggcacacgagtatctaatcctgaaattgtgttcttttatgtttatttttactatttcctttgtttcaaatccaattctcctatgtagtctga |
41497491 |
T |
|
| Q |
318 |
attagtgaatcctaatacagggccatagaagaagaaactccatttcctttctcatctgatatgatatatatgaggagctctagaacaaaaagtaatacta |
417 |
Q |
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| T |
41497490 |
attagtgaatcctaatacagggccatagaagaagaaactccatttcctttctcatatgatatgatatatatgaggagctctagaacaaaaagtaatacta |
41497391 |
T |
|
| Q |
418 |
aagagaagatgagaacctgcagtcctggaacaccgttggtcaataggagagtgatcatgccataatctgtatgaggagaggcaccatatttctcttcacg |
517 |
Q |
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| T |
41497390 |
aagagaagatgagaacctgcagtcctggaacaccgttggtcaataggagagtgatcatgccataatctgtatgaggagaggcaccatatttctcttcacg |
41497291 |
T |
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| Q |
518 |
agatcccaattcacctgatataattcacattataaaaggttacatagattatattagttggttttcttt |
586 |
Q |
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| T |
41497290 |
agatcccaattcacctgatataattcacattataaaaggttacatagattatattagttggttttcttt |
41497222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 426 - 542
Target Start/End: Complemental strand, 41491149 - 41491033
Alignment:
| Q |
426 |
atgagaacctgcagtcctggaacaccgttggtcaataggagagtgatcatgccataatctgtatgaggagaggcaccatatttctcttcacgagatccca |
525 |
Q |
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| T |
41491149 |
atgagaacctgcagtcctggaacaccgttggttaataggagagtgatcatgccataatctgaatgagcagaggcaccacatatctcttcattaggtccca |
41491050 |
T |
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| Q |
526 |
attcacctgatataatt |
542 |
Q |
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| T |
41491049 |
attcacctaatgtaatt |
41491033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 423 - 503
Target Start/End: Complemental strand, 41483306 - 41483226
Alignment:
| Q |
423 |
aagatgagaacctgcagtcctggaacaccgttggtcaataggagagtgatcatgccataatctgtatgaggagaggcacca |
503 |
Q |
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| T |
41483306 |
aagatgtgaacctgtagtcctggaacaccattggtgattaggagagtgatcatgccataatctgaatgagcagaggcacca |
41483226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 607 - 651
Target Start/End: Complemental strand, 41497198 - 41497154
Alignment:
| Q |
607 |
cttgactctactaataaagtacggcagaaaaaactttagaataat |
651 |
Q |
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| T |
41497198 |
cttgactctactaataaagtacggcagaaaaaactttagattaat |
41497154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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