View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_60 (Length: 332)
Name: NF19658_low_60
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_60 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 44991372 - 44991053
Alignment:
| Q |
13 |
atggacaaaaacccattaaaggttctccatatccaaggtacacatataacttcaataaaatttaatttgatactaagctagcttctccccgaaagtcttg |
112 |
Q |
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| T |
44991372 |
atggacaaaaacccattaaaggttctccatatccaaggtacacatataacttcaataaaatataatttgatactacgctagcttctccccgaaagtcttg |
44991273 |
T |
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| Q |
113 |
acactacgtcttcaccaaaaattttaaaacatcgattactataacaaattcatttcagctttaagtgttattgaaccatcaatttctcaggaaatactaa |
212 |
Q |
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| T |
44991272 |
acactacgtcttcaccaaaaattttaaaacatcgattactataacaaattcatttcagctttaagtgctattgaaccatcaatttctcaggaaatactaa |
44991173 |
T |
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| Q |
213 |
caaccttataaattgttgttgtattattaggaactactacagatgtagcagttccaaaggttgtaccgcgcgaaagcaagttgaaaggagcaacactgaa |
312 |
Q |
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| T |
44991172 |
caaccttataatttgttgttgtattattaggaactactacagatgtagcagttccaaaggttgtaccgcgcgaaagcaagttgaaaggagcaacactgaa |
44991073 |
T |
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| Q |
313 |
gcagacatgttcactgtgac |
332 |
Q |
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| T |
44991072 |
gcagacatgttcactgtgac |
44991053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 28271325 - 28271363
Alignment:
| Q |
13 |
atggacaaaaacccattaaaggttctccatatccaaggt |
51 |
Q |
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| T |
28271325 |
atggacaaaaacccattaaaggatctccacatccaaggt |
28271363 |
T |
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