View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_64 (Length: 314)
Name: NF19658_low_64
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 8688835 - 8688553
Alignment:
| Q |
15 |
atcaataatccc--attctttcaaggtacatatatttcccttcataaaacagcatcatattaccttgttttctaannnnnnnnnnnnaacacaaatcttt |
112 |
Q |
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| T |
8688835 |
atcaataatccctaattctttcaaggtacatatatttcccttcataaaacagcatcatattaccttgttttcta---ttttttatttaacacaaatcttt |
8688739 |
T |
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| Q |
113 |
ctcctttgtaacaaactttttcctttctctaaccagatcatactagattttacaaaatatggnnnnnnnnnnnnnnnnatctcttgtttgtagaagtgaa |
212 |
Q |
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| T |
8688738 |
ctcctttgtaacaaactttttcctttctctaaccagatgatactagtttttacaaaatatggttttttattttgttttatctcttgtttgtaggagtgag |
8688639 |
T |
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| Q |
213 |
gagtcggacccgataattcaagatttaactcgaaagtaaataaaatataatcattaattatttcggttaaaattcaacctcaaatt |
298 |
Q |
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| T |
8688638 |
gagtcggacccgataattcaggatttaactcgaaagtaaataaaatataatcaattattatttcggttaaaattcaacctcaaatt |
8688553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 8697393 - 8697352
Alignment:
| Q |
7 |
acatcatcatcaataatcccattctttcaaggtacatatatt |
48 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8697393 |
acataatcatcaataatcccattctttcaaggtacatatatt |
8697352 |
T |
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